杂草稻f.的完整叶绿体基因组

The complete chloroplast genome of weedy rice f. .

作者信息

Dong Chenfeng, Hu Yiyu, Ye Chuyu, Fan Longjiang, Guo Longbiao

机构信息

Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.

State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China.

出版信息

Mitochondrial DNA B Resour. 2021 Sep 22;6(10):3016-3017. doi: 10.1080/23802359.2021.1977197. eCollection 2021.

DOI:10.1080/23802359.2021.1977197

PMID:34568568

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8462929/

Abstract

The emergence of weedy rice ( f. ) has been considered as a serious global agricultural problem in recent decades. To better understand its speciation, here we assembled the complete chloroplast genome of f. with the length of 134,502 bp. The assembly contains a large single-copy (LSC, 80,549 bp), a small single-copy (SSC, 12,347 bp) and a pair of inverted repeats (IRa and IRb, 20,803 bp each). A total of 132 unique genes were annotated, including 82 protein-coding genes, 42 tRNA genes and eight rRNA genes. Phylogenetic analysis showed that f. ( type) appears closely related to cultivated rice rather than wild rice, supporting the hypothesis that weedy rice originated from cultivated rice.

摘要

近几十年来，杂草稻（f.）的出现被视为一个严重的全球农业问题。为了更好地理解其物种形成，我们在此组装了长度为134,502 bp的f.的完整叶绿体基因组。该组装包含一个大单拷贝（LSC，80,549 bp）、一个小单拷贝（SSC，12,347 bp）和一对反向重复序列（IRa和IRb，各20,803 bp）。总共注释了132个独特基因，包括82个蛋白质编码基因、42个tRNA基因和8个rRNA基因。系统发育分析表明，f.（类型）似乎与栽培稻密切相关，而不是与野生稻密切相关，这支持了杂草稻起源于栽培稻的假说。