Fang Lucheng, Shi Licai, Wang Wen, Wu Xiu, Hu Tingting, Huang Yideng, Rao Xingwang
First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China.
Wenzhou Medical University, Wenzhou, Zhejiang, China.
PLoS One. 2021 Sep 27;16(9):e0253545. doi: 10.1371/journal.pone.0253545. eCollection 2021.
Previous reports indicate that Cdc42-interacting protein-4 (CIP4) has previously been reported to plays an important role in the progression of various cancers. However, its correlation with laryngeal cancer (LC) remains unreported. Data from TCGA and GEO databases were used to evaluate the role of CIP4 in LC. Based on GEO and TCGA datasets, we analyzed the differences in CIP4 expression between normal and tumor samples. The Wilcoxon signed-rank test was used to analyze the relationship between clinical features and CIP4. Cox regression and the Kaplan-Meier analyses were used to identify the clinical characteristics associated with the overall survival. Also, the GEPIA database was used to confirm the relationship between CIP4 and overall survival. Lastly, Gene Set Enrichment Analysis (GSEA) was performed based on the TCGA dataset. CIP4 expression in LC was significantly associated with gender and tumor stage (p-values<0.05). Similar to GEPIA validation, Kaplan-Meier survival analysis demonstrated that LC with CIP4-low exhibited a worse prognosis than that with CIP4-high. Univariate analysis revealed that CIP4-high significantly correlated with better overall survival (HR: 0.522, 95% CI: 0.293-0.830, P = 0.026). Besides, multivariate analysis revealed that CIP4 remained independently associated with the overall survival (HR: 0.61, 95% CI: 0.326-0.912, P = 0.012). GSEA showed that the p53, WNT signaling, TGF-β signaling pathways, etc. were enriched in a phenotype high CIP4 expression. In summary, the CIP4 gene is a potential prognostic molecular marker for patients diagnosed with laryngeal cancer. Moreover, the p53, WNT signaling, and TGF-β signaling pathways are potentially associated with CIP4 in LC.
先前的报道表明,Cdc42相互作用蛋白4(CIP4)在多种癌症的进展中发挥重要作用。然而,其与喉癌(LC)的相关性仍未见报道。利用来自TCGA和GEO数据库的数据评估CIP4在喉癌中的作用。基于GEO和TCGA数据集,我们分析了正常样本与肿瘤样本中CIP4表达的差异。采用Wilcoxon符号秩检验分析临床特征与CIP4之间的关系。采用Cox回归和Kaplan-Meier分析确定与总生存期相关的临床特征。此外,利用GEPIA数据库确认CIP4与总生存期之间的关系。最后,基于TCGA数据集进行基因集富集分析(GSEA)。喉癌中CIP4的表达与性别和肿瘤分期显著相关(p值<0.05)。与GEPIA验证结果相似,Kaplan-Meier生存分析表明,CIP4低表达的喉癌患者预后比CIP4高表达的患者更差。单因素分析显示,CIP4高表达与更好的总生存期显著相关(HR:0.522,95%CI:0.293-0.830,P = 0.026)。此外,多因素分析显示,CIP4仍与总生存期独立相关(HR:0.61,95%CI:0.326-0.912,P = 0.012)。GSEA显示,p53、WNT信号通路、TGF-β信号通路等在CIP4高表达表型中富集。总之,CIP4基因是诊断为喉癌患者的潜在预后分子标志物。此外,p53、WNT信号通路和TGF-β信号通路可能与喉癌中CIP4相关。