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关于创建一个新属(新属)、将(参孙,2005年)重新分类为(新组合)以及描述一个新物种(新物种)的提议

Proposal for the creation of a new genus gen. nov., reclassification of (Samson . 2005) as comb. nov. and description of a new species sp. nov.

作者信息

Hugouvieux-Cotte-Pattat Nicole, des-Combes Cécile Jacot, Briolay Jérôme, Pritchard Leighton

机构信息

Université de Lyon, CNRS, INSA Lyon, UCBL, UMR 5240 Microbiologie Adaptation et Pathogénie, F-69622 Villeurbanne, France.

Université de Lyon, Université Claude Bernard Lyon 1, CNRS FR 3728 BioEnviS, plateforme DTAMB, F-69621 Villeurbanne, France.

出版信息

Int J Syst Evol Microbiol. 2021 Oct;71(10). doi: 10.1099/ijsem.0.005037.

Abstract

The family of important plant pathogens includes the genus . There are currently 12 described species of , although some are poorly characterized at the genomic level. Only two genomes of , the type strain CFBP 4178 and strain Ech703, have previously been sequenced. Members of this species are mostly of tropical or subtropical origin. During an investigation of strains present in our laboratory collection we sequenced the atypical strain A3967, registered as CFBP 722, isolated from (tomato) in the South of France in 1965. The genome of strain A3967 shares digital DNA-DNA hybridization and average nucleotide identity (ANI) values of 68 and 96 %, respectively, with the type strain CFBP 4178. However, ANI analysis showed that strains are significantly dissimilar to the other species, such that less than one third of their genomes align to any other genome. On phenotypic, phylogenetic and genomic grounds, we propose a reassignment of to the genus level, for which we propose the name gen. nov., with as the type species and CFBP 4178 (NCPPB 2511) as the type strain. Phenotypic analysis showed differences between strain A3967 and CFBP 4178, such as for the assimilation of melibiose, raffinose and -inositol. These results support the description of two novel species, namely comb. nov. and sp. nov., with CFBP 4178 (NCPPB 2511=LMG 2542) and A3967 (CFBP 8732=LMG 31880) as the type strains, respectively.

摘要

重要的植物病原体家族包括该属。目前已描述了12种该属物种,尽管其中一些在基因组水平上的特征描述并不完善。此前仅对该属的两个基因组进行了测序,即模式菌株CFBP 4178和菌株Ech703。该物种的成员大多起源于热带或亚热带地区。在对我们实验室保藏菌株的调查过程中,我们对一株非典型菌株A3967进行了测序,该菌株登记为CFBP 722,于1965年从法国南部的(番茄)中分离得到。菌株A3967的基因组与该属模式菌株CFBP 4178的数字DNA-DNA杂交值和平均核苷酸同一性(ANI)值分别为68%和96%。然而,ANI分析表明该属菌株与其他该属物种存在显著差异,以至于它们基因组中不到三分之一的部分与任何其他该属基因组对齐。基于表型、系统发育和基因组方面的依据,我们提议将该属重新分类到一个新的属水平,我们提议将其命名为新属,以该属作为模式种,CFBP 4178(NCPPB 2511)作为模式菌株。表型分析显示菌株A3967和CFBP 4178之间存在差异,例如在蜜二糖、棉子糖和肌醇的同化方面。这些结果支持了两个新物种的描述,即新组合和新种,分别以CFBP 4178(NCPPB 2511 = LMG 2542)和A3967(CFBP 8732 = LMG 31880)作为模式菌株。

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