Laboratory of Systems Biology and Bioinformatics (LBB), Department of Bioinformatics, Kish International Campus, University of Tehran, Kish Island, Iran.
Laboratory of Systems Biology and Bioinformatics (LBB), Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran.
BMC Genom Data. 2021 Oct 12;22(1):41. doi: 10.1186/s12863-021-00986-z.
Different factors have been introduced which influence the pathogenesis of chronic obstructive pulmonary disease (COPD) and non-small cell lung cancer (NSCLC). COPD as an independent factor is involved in the development of lung cancer. Moreover, there are certain resemblances between NSCLC and COPD, such as growth factors, activation of intracellular pathways, as well as epigenetic factors. One of the best approaches to understand the possible shared pathogenesis routes between COPD and NSCLC is to study the biological pathways that are activated. MicroRNAs (miRNAs) are critical biomolecules that implicate the regulation of several biological and cellular processes. As such, the main goal of this study was to use a systems biology approach to discover common dysregulated miRNAs between COPD and NSCLC, one that targets most genes within common enriched pathways.
To reconstruct the miRNA-pathways for each disease, we used the microarray miRNA expression data. Then, we employed "miRNA set enrichment analysis" (MiRSEA) to identify the most significant joint miRNAs between COPD and NSCLC based on the enrichment scores. Overall, our study revealed the involvement of the targets of miRNAs (such as has-miR-15b, hsa-miR-106a, has-miR-17, has-miR-103, and has-miR-107) in the most important common biological pathways.
According to the promising results of the pathway analysis, the identified miRNAs can be utilized as the new potential signatures for therapy through understanding the molecular mechanisms of both diseases.
有许多因素会影响慢性阻塞性肺疾病(COPD)和非小细胞肺癌(NSCLC)的发病机制。COPD 作为一个独立的因素,参与了肺癌的发生发展。此外,NSCLC 和 COPD 之间存在一定的相似性,例如生长因子、细胞内途径的激活以及表观遗传因素。了解 COPD 和 NSCLC 之间可能存在的共同发病机制的最佳方法之一是研究被激活的生物学途径。微小 RNA(miRNA)是一种重要的生物分子,它参与了多个生物学和细胞过程的调控。因此,本研究的主要目的是使用系统生物学方法来发现 COPD 和 NSCLC 之间共同失调的 miRNA,这些 miRNA 靶向常见富集途径中的大多数基因。
为了重建每个疾病的 miRNA 途径,我们使用了微阵列 miRNA 表达数据。然后,我们采用“miRNA 集合富集分析”(MiRSEA)基于富集分数来识别 COPD 和 NSCLC 之间最显著的共同 miRNA。总的来说,我们的研究揭示了 miRNA 靶标(如 hsa-miR-15b、hsa-miR-106a、hsa-miR-17、hsa-miR-103 和 hsa-miR-107)在最重要的共同生物学途径中的参与。
根据通路分析的有前景的结果,所鉴定的 miRNA 可通过了解两种疾病的分子机制,作为治疗的新的潜在标志物来加以利用。