State Key Laboratory of Crop Stress Biology for Arid Areas, Center of Bioinformatics, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Key Laboratory of Biology and Genetics Improvement of Maize in Arid Area of Northwest Region, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi, China.
Interdiscip Sci. 2022 Mar;14(1):279-283. doi: 10.1007/s12539-021-00480-1. Epub 2021 Oct 14.
We developed SMART v1.0 ( http://smart.omicstudio.cloud ), the first database for small molecules with functional implications in plants. The SMART database is devoted to providing and managing small molecules and their associated structural data, chemoinformatic data, protein targets, pathways and induced phenotype/function information. Currently, SMART v1.0 encompasses 1218 unique small molecules which are involved in multiple biological pathways. SMART v1.0 is featured with user-friendly interfaces, through which pathway-centered visualization of small molecules can be efficiently performed, and multiple types of searches (i.e., text search, structure similarity search and sequence similarity search) can be conveniently conducted. SMART v1.0 is also specifically designed to be a small molecule-sharing database, allowing users to release their newly discovered small molecules to public via the Contribute webpage. The SMART database will facilitate the comprehensive understanding of small molecules in complex biological processes in plants.
我们开发了 SMART v1.0(http://smart.omicstudio.cloud),这是第一个具有植物功能意义的小分子数据库。SMART 数据库致力于提供和管理小分子及其相关结构数据、化学信息数据、蛋白质靶标、途径和诱导表型/功能信息。目前,SMART v1.0 包含 1218 种独特的小分子,这些小分子涉及多个生物途径。SMART v1.0 具有用户友好的界面,通过该界面可以高效地进行以途径为中心的小分子可视化,并方便地进行多种类型的搜索(即文本搜索、结构相似性搜索和序列相似性搜索)。SMART v1.0 还专门设计为小分子共享数据库,允许用户通过“贡献”网页将他们新发现的小分子发布到公共数据库中。SMART 数据库将有助于全面了解植物复杂生物过程中的小分子。