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The complete chloroplast genome and phylogenetic analysis of Burkill (Gentianaceae) from China.

作者信息

Li Sisi, Yuan Wenbin, He Shuilian, Bai Weiwei, Wu Hongzhi

机构信息

College of Horticulture and Landscape, Yunnan Agricultural University, Kunming, Yunnan, China.

Department of Pratacultural Science and Technology, Yunnan Agricultural University, Kunming, Yunnan, China.

出版信息

Mitochondrial DNA B Resour. 2021 Oct 5;6(11):3132-3133. doi: 10.1080/23802359.2021.1984334. eCollection 2021.

DOI:10.1080/23802359.2021.1984334
PMID:34651079
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8510589/
Abstract

Burkill is a perennial herb classified in the Gentianaceae. In this study, the complete chloroplast genome of was sequenced and analyzed. The chloroplast genome is 137,458 bp in length and encodes a total of 116 genes, including 71 protein-coding, 37 tRNA, and eight rRNA genes. The genome has a low GC content of 38.0%. Phylogenetic analysis of the genome of resolved it in a clade with and The complete chloroplast genome of will be helpful to study the genetic diversity and phylogenetics of the Gentianaceae.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b31f/8510589/9fa2337f9219/TMDN_A_1984334_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b31f/8510589/9fa2337f9219/TMDN_A_1984334_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b31f/8510589/9fa2337f9219/TMDN_A_1984334_F0001_B.jpg

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本文引用的文献

1
The Complete Plastome Sequences of Seven Species in sect. (Gentianaceae): Insights Into Plastid Gene Loss and Molecular Evolution.龙胆科秦艽组七种植物的完整质体基因组序列:对质体基因丢失和分子进化的见解
Front Plant Sci. 2018 May 1;9:493. doi: 10.3389/fpls.2018.00493. eCollection 2018.
2
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
3
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.
Geneious Basic:一个集成和可扩展的桌面软件平台,用于组织和分析序列数据。
Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.
4
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.