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肌红蛋白在维生素 B12 存在下的构象动力学:光谱和计算研究。

Conformational dynamics of myoglobin in the presence of vitamin B12: A spectroscopic and in silico investigation.

机构信息

Department of Physics, Indian Institute of Technology (Indian School of Mines), Dhanbad 826004, Jharkhand, India.

Department of Chemistry, National Institute of Technology, Rourkela 769008, Odisha, India.

出版信息

Int J Biol Macromol. 2021 Dec 1;192:564-573. doi: 10.1016/j.ijbiomac.2021.10.030. Epub 2021 Oct 13.

Abstract

Myoglobin is an essential transport protein of heart and muscle tissues that acts as a local oxygen reservoir and a marker in different diseased conditions. On the other hand, Vitamin B12 is a vital nutrient that helps synthesize red blood cells, DNA, and proteins. To understand the ability of vitamin B12 to bind to the excess of myoglobin produced in the body under certain conditions (muscle injuries, severe trauma, etc.), it is essential to dig into the interaction between them. Therefore, the present study reports the binding interaction of vitamin B12 and myoglobin employing different spectroscopic and computational methods. The myoglobin's intrinsic fluorescence is quenched by vitamin B12 via static nature as observed from steady-state as well as time-resolved fluorescence measurements. The microenvironment of myoglobin's tryptophan residue gets affected, but there is no change observed in its α-helical content by vitamin B12 as seen from synchronous fluorescence and circular dichroism measurements. The probable binding of vitamin B12 on myoglobin was elucidated through molecular docking, and the interaction stability was studied by molecular dynamics simulation. The determination of vitamin B12's affinity to myoglobin and its effect on the conformational transitions of myoglobin might afford valuable insight for clinical pharmacology.

摘要

肌红蛋白是心脏和肌肉组织中一种重要的转运蛋白,它作为局部氧库和不同疾病状态的标志物。另一方面,维生素 B12 是一种重要的营养物质,有助于合成红细胞、DNA 和蛋白质。为了了解维生素 B12 在某些条件下(肌肉损伤、严重创伤等)结合体内过量肌红蛋白的能力,深入研究它们之间的相互作用是至关重要的。因此,本研究采用不同的光谱和计算方法报告了维生素 B12 和肌红蛋白的结合相互作用。从稳态和时间分辨荧光测量中观察到,维生素 B12 通过静态方式猝灭肌红蛋白的固有荧光。维生素 B12 影响肌红蛋白色氨酸残基的微环境,但从同步荧光和圆二色性测量中观察到其α-螺旋含量没有变化。通过分子对接阐明了维生素 B12 与肌红蛋白的可能结合,并通过分子动力学模拟研究了其相互作用的稳定性。确定维生素 B12 对肌红蛋白的亲和力及其对肌红蛋白构象转变的影响,可能为临床药理学提供有价值的见解。

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