Chemistry Department, University of Birjand, Iran.
Chemistry Department, University of Birjand, Iran.
J Mol Graph Model. 2021 Dec;109:108041. doi: 10.1016/j.jmgm.2021.108041. Epub 2021 Oct 6.
Loading of the Doxorubicin (DOX) as an anticancer drug molecule on boron nitride (BN) nanosheets with different sizes, in the presence and absence of Folic Acid (FA) functional groups, are investigated using molecular dynamic simulations. The obtained results from these investigations revealed that the drug molecules are spontaneously adsorbed the carriers and form stable complexes. It is also shown that an increase the nanosheet leads to an enhancement in its capacity to adsorb the drugs. Furthermore, the conjugation of BN with the FA group not only improves the BN efficiency for the drug adsorption but also helps the drug-carrier complex to target the cancerous cells. Evaluation of interaction energies reveals that L-J interaction plays an essential role in the adsorption of the drug molecules on the BN. The radial distribution function (RDF) shows that the highest drug position probability is around 0.6 nm away from the BN surface. Atomic RDF analysis is in line with the interaction energy analysis and proved that π-π stacking contributes the most to this process. Hydrogen bond (HB) analysis also shows that, although limited, the columbic interaction can be helpful in the adsorption process. Moreover, the free energy (FE) surface is explored for a system containing a BN nanosheet, an FA group, and a DOX molecule through metadynamics simulations. The obtained results reveal that the lowest FE point located in coordinations d1 = 0.70 nm and d2 = 0.84 nm, and energetically reached -280.42 kJ/mol. It can be concluded from the FE calculations that while the FA is stuck on the substrate, DOX faces difficulty in the way it be adsorbed. In return, it will be hard for the molecule to be released from the BN surface through desorption processes in neutral pH because it faces an energy barrier with a height of ∼100 kJ/mol at 1.6 nm.
利用分子动力学模拟研究了不同尺寸的氮化硼(BN)纳米片在叶酸(FA)官能团存在和不存在的情况下,作为抗癌药物分子的阿霉素(DOX)的负载情况。这些研究的结果表明,药物分子自发地吸附在载体上并形成稳定的复合物。研究还表明,纳米片的增加会提高其吸附药物的能力。此外,BN 与 FA 基团的结合不仅提高了 BN 对药物吸附的效率,还有助于药物载体复合物靶向癌细胞。相互作用能的评估表明,L-J 相互作用在药物分子吸附到 BN 上起着至关重要的作用。径向分布函数(RDF)表明,药物位置概率最高的位置在距离 BN 表面 0.6nm 左右。原子 RDF 分析与相互作用能分析一致,证明了π-π 堆积对这一过程贡献最大。氢键(HB)分析也表明,尽管有限,但库仑相互作用在吸附过程中可能会有所帮助。此外,还通过元动力学模拟对含有 BN 纳米片、FA 基团和 DOX 分子的系统进行了自由能(FE)表面的探索。得到的结果表明,最低的 FE 点位于 d1=0.70nm 和 d2=0.84nm 的协调位置,能量达到-280.42kJ/mol。从 FE 计算可以得出结论,当 FA 粘在基底上时,DOX 难以被吸附。相反,由于在中性 pH 值下通过解吸过程从 BN 表面释放分子时会遇到约 100kJ/mol 的能垒,因此 DOX 分子很难从 BN 表面释放出来。