Farzad Farzaneh, Hashemzadeh Hassan
Department of Chemistry, University of Birjand, Birjand, Iran.
Department of Chemistry, University of Birjand, Birjand, Iran.
J Mol Graph Model. 2020 Jul;98:107613. doi: 10.1016/j.jmgm.2020.107613. Epub 2020 Apr 15.
The stability of Gemcitabine (Gem) anticancer drug on the hexagonal boron nitride (h-BN) and functionalized h-BN with polyethylene glycol (PEG-h-BN) as drug delivery carriers (DDSs) is investigated. The density functional theory (DFT) calculations, molecular dynamics (MD) simulation and Metadynamics simulations are used to study the nature of h-BN-Gem interactions as well as the role of PEG group to increase the efficiency of the DDS. The results of DFT calculations reveal that the drug physisorbed on the h-BN surface through the formation of π-π stacking with an adsorption energy range -15.08 kJ/mol to -90.74 kJ/mol. Moreover, the obtained results show that the grafting the PEG group to h-BN cause to π-π stacking is reinforced by the formation of strong HBs and leads to increase adsorption energy about 20%. There is a good agreement between DFT calculation and MD simulation results. Also, The MD simulations demonstrate in adsorption of the drug on the carriers, the contribution of van der Waals energy is more than the electrostatic energy. The well-tempered metadynamics simulations are performed to find the free energy surface (FES) of the studied systems. The FES for the Gem/h-BN and Gem/PEG-h-BN interfaces show the global minimum at around 3.0-6.0 Å and 1.2 Å, respectively. The orientational analysis proves that the global minimum can be related to the formation of π-π stacking and HB interaction.
研究了吉西他滨(Gem)抗癌药物在六方氮化硼(h-BN)以及用聚乙二醇功能化的h-BN(PEG-h-BN)作为药物递送载体(DDS)时的稳定性。采用密度泛函理论(DFT)计算、分子动力学(MD)模拟和元动力学模拟来研究h-BN与Gem相互作用的本质以及PEG基团在提高DDS效率方面的作用。DFT计算结果表明,药物通过形成π-π堆积以-15.08 kJ/mol至-90.74 kJ/mol的吸附能物理吸附在h-BN表面。此外,所得结果表明,将PEG基团接枝到h-BN上会因形成强氢键而增强π-π堆积,并导致吸附能增加约20%。DFT计算结果与MD模拟结果吻合良好。而且,MD模拟表明,在药物吸附到载体上的过程中,范德华能的贡献大于静电能。进行了加权元动力学模拟以找到所研究体系的自由能表面(FES)。Gem/h-BN和Gem/PEG-h-BN界面的FES分别在约3.0 - 6.0 Å和1.2 Å处显示出全局最小值。取向分析证明,全局最小值可能与π-π堆积和氢键相互作用的形成有关。