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一种引发φX174病毒DNA复制的多酶系统。

A multienzyme system for priming the replication of phiX174 viral DNA.

作者信息

McMacken R, Kornberg A

出版信息

J Biol Chem. 1978 May 10;253(9):3313-9.

PMID:346590
Abstract

Synthesis of the oligonucleotides that prime replication of phiX174 single-stranded DNA employs complex protein machinery of the host cell which is probably used by the cell to replicate its own chromosome. Primer synthesis depends on at least five proteins (DNA binding protein, dnaB and dnaC proteins, protein i, and protein n) and ATP to form a replication intermediate and another protein, primase (dnaG protein), to assemble the oligonucleotide by template transcription. The data in this paper show that ribo- and deoxyribonucleoside triphosphates can serve as substrates and form hybrid primers when present together. Both RNA and DNA primers were initiated with ATP. At least three of the four base-pairing nucleoside triphosphates were required for the transcription that generates effective primers. Over 90% of the RNA and DNA transcripts were extended into complementary strands by DNA polymerase III holoenzyme. At optimal triphosphate concentrations, the rate and extent of primer formation were greater from ribonucleoside triphosphates than from deoxyribonucleoside triphosphates. Uncoupled from DNA replication, the length of RNA primers was 14 to 50 residues, the DNA primers 4 to 20 residues. The fingerprint pattern of an RNase digest of RNA primers has a complexity suggestive of transcription from many sites on the phiX174 template. The multienzyme priming system is highly specific for phiX174 DNA as template.

摘要

引发φX174单链DNA复制的寡核苷酸的合成利用了宿主细胞的复杂蛋白质机制,该机制可能被细胞用于复制其自身的染色体。引物合成至少依赖于五种蛋白质(DNA结合蛋白、dnaB和dnaC蛋白、蛋白i和蛋白n)以及ATP来形成复制中间体,还依赖于另一种蛋白质,即引发酶(dnaG蛋白),通过模板转录来组装寡核苷酸。本文中的数据表明,核糖核苷三磷酸和脱氧核糖核苷三磷酸都可以作为底物,当同时存在时会形成杂交引物。RNA和DNA引物均由ATP起始。转录生成有效引物需要四种碱基配对的核苷三磷酸中的至少三种。超过90%的RNA和DNA转录物被DNA聚合酶III全酶延伸成互补链。在最佳三磷酸浓度下,核糖核苷三磷酸形成引物的速率和程度比脱氧核糖核苷三磷酸更大。与DNA复制解偶联时,RNA引物的长度为14至50个残基,DNA引物为4至20个残基。RNA引物的RNase消化指纹图谱的复杂性表明是从φX174模板上的多个位点进行转录的。多酶引发系统对作为模板的φX174 DNA具有高度特异性。

相似文献

1
A multienzyme system for priming the replication of phiX174 viral DNA.一种引发φX174病毒DNA复制的多酶系统。
J Biol Chem. 1978 May 10;253(9):3313-9.
2
Site selection and structure of DNA-linked RNA primers synthesized by the primosome in phage phi X174 DNA replication in vitro.噬菌体φX174体外DNA复制中引发体合成的与DNA相连的RNA引物的位点选择及结构
J Biol Chem. 1983 Nov 10;258(21):13353-8.
3
Mechanism and stoichiometry of interaction of DnaG primase with DnaB helicase of Escherichia coli in RNA primer synthesis.大肠杆菌RNA引物合成过程中DnaG引发酶与DnaB解旋酶相互作用的机制和化学计量关系。
J Biol Chem. 2003 Dec 26;278(52):52253-61. doi: 10.1074/jbc.M308956200. Epub 2003 Oct 13.
4
Primase, the dnaG protein of Escherichia coli. An enzyme which starts DNA chains.引发酶,即大肠杆菌的dnaG蛋白。一种启动DNA链合成的酶。
J Biol Chem. 1978 Feb 10;253(3):758-64.
5
Association of phiX174 DNA-dependent ATPase activity with an Escherichia coli protein, replication factor Y, required for in vitro synthesis of phiX174 DNA.φX174 DNA 依赖性 ATP 酶活性与一种大肠杆菌蛋白复制因子 Y 的关联,该蛋白是体外合成 φX174 DNA 所必需的。
Proc Natl Acad Sci U S A. 1975 Sep;72(9):3342-6. doi: 10.1073/pnas.72.9.3342.
6
The ordered assembly of the phiX174-type primosome. II. Preservation of primosome composition from assembly through replication.φX174型引发体的有序组装。II. 引发体组成从组装到复制过程中的保存。
J Biol Chem. 1996 Jun 28;271(26):15649-55. doi: 10.1074/jbc.271.26.15649.
7
Ten proteins required for conversion of phiX174 single-stranded DNA to duplex form in vitro. Resolution and reconstitution.体外将φX174单链DNA转化为双链形式所需的十种蛋白质。解析与重组。
J Biol Chem. 1975 Aug 10;250(15):5859-65.
8
DNA synthesis in vitro dependent upon phiX174 replicative form I DNA.体外DNA合成依赖于φX174复制型I DNA。
Proc Natl Acad Sci U S A. 1976 Jun;73(6):1887-91. doi: 10.1073/pnas.73.6.1887.
9
Migration of Escherichia coli dnaB protein on the template DNA strand as a mechanism in initiating DNA replication.大肠杆菌dnaB蛋白在模板DNA链上的迁移作为启动DNA复制的一种机制。
Proc Natl Acad Sci U S A. 1977 Oct;74(10):4190-4. doi: 10.1073/pnas.74.10.4190.
10
Bacteriophage-T7-induced DNA-priming protein. A novel enzyme involved in DNA replication.噬菌体-T7诱导的DNA引发蛋白。一种参与DNA复制的新型酶。
Eur J Biochem. 1977 Feb;72(3):543-58. doi: 10.1111/j.1432-1033.1977.tb11278.x.

引用本文的文献

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Direct removal of RNA polymerase barriers to replication by accessory replicative helicases.辅助复制解旋酶直接去除 RNA 聚合酶复制障碍。
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Modeling Microvirus Capsid Protein Evolution Utilizing Metagenomic Sequence Data.利用宏基因组序列数据对微小病毒衣壳蛋白进化进行建模
J Mol Evol. 2016 Aug;83(1-2):38-49. doi: 10.1007/s00239-016-9751-y. Epub 2016 Jul 6.
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Interactions of Escherichia coli primary replicative helicase DnaB protein with nucleotide cofactors.
大肠杆菌主要复制解旋酶DnaB蛋白与核苷酸辅因子的相互作用。
Biophys J. 1996 Oct;71(4):2075-86. doi: 10.1016/S0006-3495(96)79406-7.
4
Biochemical characterization of Escherichia coli temperature-sensitive dnaB mutants dnaB8, dnaB252, dnaB70, dnaB43, and dnaB454.大肠杆菌温度敏感型 dnaB 突变体 dnaB8、dnaB252、dnaB70、dnaB43 和 dnaB454 的生化特性
J Bacteriol. 1995 Feb;177(4):1104-11. doi: 10.1128/jb.177.4.1104-1111.1995.
5
Domains of Escherichia coli primase: functional activity of a 47-kDa N-terminal proteolytic fragment.大肠杆菌引发酶的结构域:一个47 kDa N端蛋白水解片段的功能活性
Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11462-6. doi: 10.1073/pnas.91.24.11462.
6
Pentaribonucleotides of mixed sequence are synthesized and efficiently prime de novo DNA chain starts in the T4 bacteriophage DNA replication system.混合序列的五聚核糖核苷酸在T4噬菌体DNA复制系统中被合成,并有效地引发从头DNA链的起始。
Proc Natl Acad Sci U S A. 1980 Oct;77(10):5698-702. doi: 10.1073/pnas.77.10.5698.
7
Sequences of the Escherichia coli dnaG primase gene and regulation of its expression.大肠杆菌dnaG引发酶基因序列及其表达调控。
Proc Natl Acad Sci U S A. 1982 Aug;79(15):4550-4. doi: 10.1073/pnas.79.15.4550.
8
Unique primed start of phage phi X174 DNA replication and mobility of the primosome in a direction opposite chain synthesis.噬菌体φX174 DNA复制独特的引发起始以及引发体沿与链合成相反方向的移动。
Proc Natl Acad Sci U S A. 1981 Jan;78(1):69-73. doi: 10.1073/pnas.78.1.69.
9
Evidence of RNA in D loops of intracellular lambda DNA.细胞内λ噬菌体DNA D环中存在RNA的证据。
Proc Natl Acad Sci U S A. 1980 Apr;77(4):2153-7. doi: 10.1073/pnas.77.4.2153.
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An Escherichia coli replication protein that recognizes a unique sequence within a hairpin region in phi X174 DNA.一种能识别φX174 DNA发夹区域内独特序列的大肠杆菌复制蛋白。
Proc Natl Acad Sci U S A. 1980 Feb;77(2):799-803. doi: 10.1073/pnas.77.2.799.