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PROSER1 介导 TET2 的 O-GlcNAc 化修饰,以调节 UTX 依赖性增强子和 CpG 岛上的 DNA 去甲基化。

PROSER1 mediates TET2 O-GlcNAcylation to regulate DNA demethylation on UTX-dependent enhancers and CpG islands.

机构信息

Department of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.

Center for Applied Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN, USA.

出版信息

Life Sci Alliance. 2021 Oct 19;5(1). doi: 10.26508/lsa.202101228. Print 2022 Jan.

Abstract

DNA methylation at enhancers and CpG islands usually leads to gene repression, which is counteracted by DNA demethylation through the TET protein family. However, how TET enzymes are recruited and regulated at these genomic loci is not fully understood. Here, we identify TET2, the glycosyltransferase OGT and a previously undescribed proline and serine rich protein, PROSER1 as interactors of UTX, a component of the enhancer-associated MLL3/4 complexes. We find that PROSER1 mediates the interaction between OGT and TET2, thus promoting TET2 O-GlcNAcylation and protein stability. In addition, PROSER1, UTX, TET1/2, and OGT colocalize on many genomic elements genome-wide. Loss of PROSER1 results in lower enrichment of UTX, TET1/2, and OGT at enhancers and CpG islands, with a concomitant increase in DNA methylation and transcriptional down-regulation of associated target genes and increased DNA hypermethylation encroachment at H3K4me1-predisposed CpG islands. Furthermore, we provide evidence that PROSER1 acts as a more general regulator of OGT activity by controlling O-GlcNAcylation of multiple other chromatin signaling pathways. Taken together, this study describes for the first time a regulator of TET2 O-GlcNAcylation and its implications in mediating DNA demethylation at UTX-dependent enhancers and CpG islands and supports an important role for PROSER1 in regulating the function of various chromatin-associated proteins via OGT-mediated O-GlcNAcylation.

摘要

增强子和 CpG 岛上的 DNA 甲基化通常导致基因沉默,而 TET 蛋白家族通过 DNA 去甲基化来对抗这种沉默。然而,TET 酶如何在这些基因组位置被招募和调控还不完全清楚。在这里,我们鉴定出 TET2、糖基转移酶 OGT 和一个以前未被描述的富含脯氨酸和丝氨酸的蛋白 PROSER1 是 UTX 的相互作用蛋白,UTX 是增强子相关的 MLL3/4 复合物的一个组成部分。我们发现 PROSER1 介导了 OGT 和 TET2 之间的相互作用,从而促进了 TET2 的 O-GlcNAc 化和蛋白质稳定性。此外,PROSER1、UTX、TET1/2 和 OGT 在全基因组范围内广泛定位于许多基因组元件上。PROSER1 的缺失导致 UTX、TET1/2 和 OGT 在增强子和 CpG 岛上的富集减少,同时伴随着 DNA 甲基化增加和相关靶基因转录下调,以及 H3K4me1 倾向的 CpG 岛上的 DNA 超甲基化侵袭增加。此外,我们提供了证据表明,PROSER1 通过控制多个其他染色质信号通路的 O-GlcNAc 化,作为 OGT 活性的更普遍调节剂。总之,这项研究首次描述了 TET2 O-GlcNAc 化的调节剂及其在介导 UTX 依赖性增强子和 CpG 岛上的 DNA 去甲基化中的作用,并支持 PROSER1 通过 OGT 介导的 O-GlcNAc 化在调节各种染色质相关蛋白的功能方面发挥重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8394/8548262/613ce33bf1a8/LSA-2021-01228_Fig1.jpg

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