Department of Microbiology, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, Lwowska 1, 87 100 Torun, Poland.
School of Natural and Environmental Sciences, Ridley Building, Newcastle University, Newcastle upon Tyne NE1 7RU, UK.
Int J Syst Evol Microbiol. 2021 Oct;71(10). doi: 10.1099/ijsem.0.005063.
The taxonomic status of two filamentous actinobacteria, isolates NF23 and NL8, recovered from the litter layer of a pine forest soil in Poland was established in a genome-based polyphasic study. The isolates showed a combination of chemotaxonomic, morphological and physiological properties associated with their classification in the genus . They formed a well supported lineage within the 16S rRNA gene tree and were most closely related to the type strains of (99.1%), (99.9 %) and (99.1 %), and like them, were found to have large genomes (10.8 and 11.5 Mbp, respectively). A phylogenomic tree based on the draft genomes of isolates NF23 and NL8 and their phylogenetic neighbours showed that they formed a distinct branch in the clade that was most closely related to DSM 111109. The isolates shared a combination of genomic, genotypic and phenotypic features, and had high average nucleotide index (ANI) and digital DNA:DNA hybridization (dDDH) similarities consistent with their assignment to the same species. The isolates were distinguished from the and strains by a wealth of taxonomic data and by low ANI (84.9-93.9 %) and dDDH (29.6-54.7 %) values. It is proposed that the isolates be classified in the genus as sp. nov. with isolate NL8 (=DSM 111110=PCM 3045) as the type strain. The genomes of strains NF23 and NL8 are rich in natural product-biosynthetic gene clusters hence these strains have the potential to synthesize new specialised metabolites.
在一项基于基因组的多相研究中,确定了从波兰松林土壤凋落物层中分离出的两种丝状放线菌 NF23 和 NL8 的分类地位。这些分离物表现出与它们在属内分类相关的化学分类、形态和生理特性的组合。它们在 16S rRNA 基因树中形成了一个支持良好的谱系,与 (99.1%)、 (99.9%)和 (99.1%)的模式菌株最为密切相关,与它们一样,它们的基因组较大(分别为 10.8 和 11.5 Mbp)。基于分离株 NF23 和 NL8 的草图基因组及其系统发育近邻构建的系统发育基因组树表明,它们在 枝中形成了一个独特的分支,与 DSM 111109 最为密切相关。分离株共享基因组、基因型和表型特征的组合,具有较高的平均核苷酸指数(ANI)和数字 DNA:DNA 杂交(dDDH)相似性,与它们被归为同一物种一致。这些分离株与 和 菌株在丰富的分类数据和较低的 ANI(84.9-93.9%)和 dDDH(29.6-54.7%)值方面有所区别。建议将这些分离株归类为 属的新种,其中 NL8 分离株(=DSM 111110=PCM 3045)为模式菌株。NF23 和 NL8 菌株的基因组富含天然产物生物合成基因簇,因此这些菌株具有合成新的特殊代谢物的潜力。