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荒漠动杆菌新种和橙黄动杆菌新种,两株来自 Cholistan 沙漠土壤中的新型放线菌,及动杆菌属的修订描述。

Motilibacter deserti sp. nov. and Motilibacter aurantiacus sp. nov., two novel actinobacteria isolated from soil of Cholistan Desert and emended description of the genus Motilibacter.

机构信息

Department of Microbial Chemistry, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, China; Beijing Key Laboratory of Antimicrobial Agents, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, China.

Department of Microbial Chemistry, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, China; College of Basic Medical Sciences, Guilin Medical University, Guilin 541004, China.

出版信息

Syst Appl Microbiol. 2020 Nov;43(6):126150. doi: 10.1016/j.syapm.2020.126150. Epub 2020 Oct 7.

Abstract

Two novel actinobacterial strains, designated as E257 and K478, were isolated from hyper-arid soil samples collected in Cholistan Desert, Pakistan. Comparative analysis of 16S rRNA genes showed that strains E257 and K478 were assigned to the genus Motilibacter, being their closest relative M. rhizosphaerae RS-16 with 97.3% and 96.7% similarities, respectively. The sequence similarity between strain E257 and K478 was 98.9%. Phylogenetic analysis based on 16S rRNA gene sequences and phylogenomic analysis based on multiple genes of conserved core proteins exhibited that these two strains belonged to the genus Motilibacter and formed a robust cluster separated from the two type species of the genus Motilibacter. Average Nucleotide Identity (ANI), Average Amino acid Identity (AAI), digital DNA-DNA hybridization (dDDH) values and Percentage of Conserved Proteins (POCP) calculated from the complete genome sequences indicated strains E257 and K478 were assigned into genus Motilibacter but clearly separated from each other and from the other species of the genus Motilibacter with values below the thresholds for species delineation. The two isolates were found to have chemotaxonomic, cultural and morphological properties consistent with their classification in the genus Motilibacter and also confirmed the differentiation from their closest species. The obtained results demonstrated that strains E257 and K478 represent two novel species of the genus Motilibacter, for which the names Motilibacter desertisp. nov. (type strain E257 = JCM 33651 = CGMCC 1.17159) and Motilibacter aurantiacus sp. nov. (type strain K478 =JCM 33652 =CGMCC 1.17229) are proposed.

摘要

两株新型放线菌菌株,分别命名为 E257 和 K478,从巴基斯坦乔利斯坦沙漠采集的极端干旱土壤样本中分离得到。16S rRNA 基因的比较分析表明,菌株 E257 和 K478 被归为游动放线菌属,与最接近的种 Rhizosphaerae RS-16 的相似度分别为 97.3%和 96.7%。菌株 E257 和 K478 之间的序列相似度为 98.9%。基于 16S rRNA 基因序列的系统发育分析和基于多个保守核心蛋白的基因组分析表明,这两株菌属于游动放线菌属,形成了一个与游动放线菌属的两个模式种分离的稳健聚类。基于全基因组序列计算的平均核苷酸同一性(ANI)、平均氨基酸同一性(AAI)、数字 DNA-DNA 杂交(dDDH)值和保守蛋白百分比(POCP)表明,菌株 E257 和 K478 被归入游动放线菌属,但彼此之间以及与游动放线菌属的其他种明显分离,这些值低于种的划分阈值。这两个分离株具有化学分类学、培养和形态学特性,与它们在游动放线菌属中的分类一致,也证实了与最接近的种的分化。研究结果表明,菌株 E257 和 K478 代表游动放线菌属的两个新种,分别命名为游动放线菌沙漠亚种(E257 株=JCM 33651=CGMCC 1.17159)和橙色游动放线菌(K478 株=JCM 33652=CGMCC 1.17229)。

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