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Dogo Argentino 犬中存在不成比例矮小症的剪接位点变异。

Splice Site Variant in Dogo Argentino Dogs with Disproportionate Dwarfism.

机构信息

Institute of Genetics, Vetsuisse Faculty, University of Bern, 3001 Bern, Switzerland.

Institute of Veterinary Genetics "Ing. Fernando Noel Dulout", National University of La Plata, La Plata B1900, Argentina.

出版信息

Genes (Basel). 2021 Sep 24;12(10):1489. doi: 10.3390/genes12101489.

DOI:10.3390/genes12101489
PMID:34680883
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8535654/
Abstract

Dwarfism phenotypes occur in many species and may be caused by genetic or environmental factors. In this study, we investigated a family of nine Dogo Argentino dogs, in which two dogs were affected by disproportionate dwarfism. Radiographs of an affected dog revealed a decreased level of endochondral ossification in its growth plates, and a premature closure of the distal ulnar physes. The pedigree of the dogs presented evidence of monogenic autosomal recessive inheritance; combined linkage and homozygosity mapping assigned the most likely position of a potential genetic defect to 34 genome segments, totaling 125 Mb. The genome of an affected dog was sequenced and compared to 795 control genomes. The prioritization of private variants revealed a clear top candidate variant for the observed dwarfism. This variant, :XM_022413533.1:c.1634+1G>T, affects the splice donor site and is therefore predicted to disrupt the function of the gene encoding protein, kinase cGMP-dependent type 2, a known regulator of chondrocyte differentiation. The genotypes of the variant were perfectly associated with the phenotype in the studied family of dogs. loss-of-function variants were previously reported to cause disproportionate dwarfism in humans, cattle, mice, and rats. Together with the comparative data from other species, our data strongly suggest :c.1634+1G>T to be a candidate causative variant for the observed dwarfism phenotype in Dogo Argentino dogs.

摘要

矮化表型发生在许多物种中,可能由遗传或环境因素引起。在这项研究中,我们调查了一个由 9 只 Dogo Argentino 犬组成的家族,其中两只狗患有不成比例的矮化症。受影响狗的射线照片显示其生长板的软骨内骨化程度降低,并且远端尺骨骨骺过早闭合。这些狗的家谱表明存在单基因常染色体隐性遗传的证据;结合连锁和纯合性作图将潜在遗传缺陷的最可能位置分配给 34 个基因组片段,总长度为 125Mb。受影响狗的基因组被测序并与 795 个对照基因组进行比较。私有变体的优先级排序揭示了一个明显的候选变体,用于观察到的矮化症。该变体,:XM_022413533.1:c.1634+1G>T,影响剪接供体位点,因此预计会破坏编码蛋白激酶 cGMP 依赖性 2 的基因的功能,该蛋白是已知的软骨细胞分化调节剂。研究中犬只的 变体基因型与表型完全相关。先前报道的 功能丧失变体在人类、牛、小鼠和大鼠中引起不成比例的矮化症。结合来自其他物种的比较数据,我们的数据强烈表明:c.1634+1G>T 是 Dogo Argentino 犬观察到的矮化表型的候选致病变体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb3f/8535654/b9646247c630/genes-12-01489-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb3f/8535654/d883f68a6678/genes-12-01489-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb3f/8535654/499d97bb5132/genes-12-01489-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb3f/8535654/fff8ba361abe/genes-12-01489-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb3f/8535654/b9646247c630/genes-12-01489-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb3f/8535654/d883f68a6678/genes-12-01489-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb3f/8535654/499d97bb5132/genes-12-01489-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb3f/8535654/fff8ba361abe/genes-12-01489-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb3f/8535654/b9646247c630/genes-12-01489-g004.jpg

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