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逆转录数字 PCR 定量检测 SARS-CoV-2 RNA 的实验室间评估

Interlaboratory assessment of quantification of SARS-CoV-2 RNA by reverse transcription digital PCR.

机构信息

Center for Advanced Measurement Science, National Institute of Metrology, Beijing, China.

Center for Reference Materials Research and Management (Office of National Research Center for Certified Reference Materials), National Institute of Metrology, Beijing, China.

出版信息

Anal Bioanal Chem. 2021 Dec;413(29):7195-7204. doi: 10.1007/s00216-021-03680-2. Epub 2021 Oct 26.

Abstract

The pandemic of the novel coronavirus disease 2019 (COVID-19) has caused severe harm to the health of people all around the world. Molecular detection of the pathogen, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), played a crucial role in the control of the disease. Reverse transcription digital PCR (RT-dPCR) has been developed and used in the detection of SARS-CoV-2 RNA as an absolute quantification method. Here, an interlaboratory assessment of quantification of SARS-CoV-2 RNA was organized by the National Institute of Metrology, China (NIMC), using in vitro transcribed RNA samples, among ten laboratories on six different dPCR platforms. Copy number concentrations of three genes of SARS-CoV-2 were measured by all participants. Consistent results were obtained with dispersion within 2.2-fold and CV% below 23% among different dPCR platforms and laboratories, and Z' scores of all the reported results being satisfactory. Possible reasons for the dispersion included PCR assays, partition volume, and reverse transcription conditions. This study demonstrated the comparability and applicability of RT-dPCR method for quantification of SARS-CoV-2 RNA and showed the capability of the participating laboratories at SARS-CoV-2 test by RT-dPCR platform.

摘要

新型冠状病毒病 2019(COVID-19)大流行对全球人民的健康造成了严重危害。病原体,即严重急性呼吸综合征冠状病毒 2(SARS-CoV-2)的分子检测在疾病控制中发挥了关键作用。逆转录数字 PCR(RT-dPCR)已被开发并用于 SARS-CoV-2 RNA 的检测,作为一种绝对定量方法。在这里,中国计量科学研究院(NIMC)组织了一次 SARS-CoV-2 RNA 定量的实验室间评估,使用了十种不同的 dPCR 平台上的体外转录 RNA 样本。所有参与者均测量了 SARS-CoV-2 的三个基因的拷贝数浓度。不同 dPCR 平台和实验室之间的分散度在 2.2 倍以内,CV%低于 23%,且所有报告结果的 Z'分数均令人满意,这表明结果具有一致性。分散的可能原因包括 PCR 检测、分区体积和反转录条件。这项研究证明了 RT-dPCR 方法用于 SARS-CoV-2 RNA 定量的可比性和适用性,并展示了参与实验室通过 RT-dPCR 平台进行 SARS-CoV-2 检测的能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e5cd/8545465/8ed17130c0d6/216_2021_3680_Fig1_HTML.jpg

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