Department of Clinical Biochemistry, School of Medicine, Rafsanjan University of Medical Sciences, Rafsanjan, Iran.
Non-Communicable Diseases Research Center, Rafsanjan University of Medical Sciences, Rafsanjan, Iran.
PLoS One. 2021 Oct 28;16(10):e0259085. doi: 10.1371/journal.pone.0259085. eCollection 2021.
Proprotein convertases subtilisin kexins are serine endoproteases, playing critical roles in the biological functions, including lipid, glucose, and bile acid metabolism, as well as cell proliferation, migration, and metastasis. Experimental studies have demonstrated the physiological functions of PCSKs and their association with diseases; however, studies on the evolutionary history and diversification of these proteins are missing. In the present research, a bioinformatics study was conducted on the molecular evolution of several PCSKs family members and gene loss events across placental mammalian. In order to detect evolutionary constraints and positive selection, the CodeML program of the PAML package was used. The results showed the positive selection to occur in PCSK1, PCSK3, PCSK5, and PCSK7. A decelerated rate of evolution was observed in PCSK7, PCSK3, and MBTPS1 in Carnivores compared to the rest of phylogeny, and an accelerated evolution of PCSK1, PCSK7, and MBTPS1 in Muridae family of rodents was found. Additionally, our results indicated pcsk9 gene loss in 12 species comprising Carnivores and bats (Chiroptera). Future studies are required to evaluate the functional relevance and selective evolutionary advantages associated with these modifications in PCSK proteins during evolution.
脯氨酸内切蛋白酶枯草溶菌素 kexin 是丝氨酸内肽酶,在生物学功能中发挥着关键作用,包括脂质、葡萄糖和胆汁酸代谢,以及细胞增殖、迁移和转移。实验研究已经证明了 PCSKs 的生理功能及其与疾病的关联;然而,这些蛋白质的进化历史和多样化的研究仍然缺失。在本研究中,我们对几种 PCSKs 家族成员的分子进化以及胎盘哺乳动物中的基因缺失事件进行了生物信息学研究。为了检测进化约束和正选择,我们使用了 PAML 包中的 CodeML 程序。结果表明,PCSK1、PCSK3、PCSK5 和 PCSK7 发生了正选择。与系统发育的其余部分相比,食肉动物中的 PCSK7、PCSK3 和 MBTPS1 进化速度较慢,而啮齿动物中的 MBTPS1、PCSK1 和 PCSK7 进化速度较快。此外,我们的结果表明,包括食肉动物和蝙蝠(翼手目)在内的 12 个物种中存在 pcsk9 基因缺失。未来的研究需要评估这些 PCSK 蛋白在进化过程中发生的修饰与功能相关性和选择性进化优势之间的关系。