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金属离子催化转氨基作用的机理研究

Mechanistic Insight into Metal Ion-Catalyzed Transamination.

机构信息

University of Strasbourg, CNRS, ISIS UMR 7006, 67000 Strasbourg, France.

出版信息

J Am Chem Soc. 2021 Nov 17;143(45):19099-19111. doi: 10.1021/jacs.1c08535. Epub 2021 Nov 3.

Abstract

Several classes of biological reactions that are mediated by an enzyme and a co-factor can occur, to a slower extent, not only without the enzyme but even without the co-factor, under catalysis by metal ions. This observation has led to the proposal that metabolic pathways progressively evolved from using inorganic catalysts to using organocatalysts of increasing complexity. Transamination, the biological process by which ammonia is transferred between amino acids and α-keto acids, has a mechanism that has been well studied under enzyme/co-factor catalysis and under co-factor catalysis, but the metal ion-catalyzed variant was generally studied mostly at high temperatures (70-100 °C), and the details of its mechanism remained unclear. Here, we investigate which metal ions catalyze transamination under conditions relevant to biology (pH 7, 20-50 °C) and study the mechanism in detail. Cu, Ni, Co, and V were identified as the most active metal ions under these constraints. Kinetic, stereochemical, and computational studies illuminate the mechanism of the reaction. Cu and Co are found to predominantly speed up the reaction by stabilizing a key imine intermediate. V is found to accelerate the reaction by increasing the acidity of the bound imine. Ni is found to do both to a limited extent. These results show that direct metal ion-catalyzed amino group transfer is highly favored even in the absence of co-factors or protein catalysts under biologically compatible reaction conditions.

摘要

在金属离子的催化下,许多由酶和辅助因子介导的生物反应可以在没有酶甚至没有辅助因子的情况下缓慢发生。这一观察结果导致了这样一种假设,即代谢途径逐渐从使用无机催化剂演变为使用越来越复杂的有机催化剂。转氨基作用是一种生物过程,通过该过程氨在氨基酸和α-酮酸之间转移,其机制在酶/辅助因子催化和辅助因子催化下已经得到了很好的研究,但金属离子催化的变体通常在高温(70-100°C)下进行研究,其机制细节仍不清楚。在这里,我们研究了在与生物学相关的条件(pH 7,20-50°C)下哪些金属离子可以催化转氨基作用,并详细研究了其机制。Cu、Ni、Co 和 V 被确定为在这些限制条件下最活跃的金属离子。动力学、立体化学和计算研究阐明了反应的机制。发现 Cu 和 Co 主要通过稳定关键亚胺中间体来加速反应。发现 V 通过增加结合亚胺的酸度来加速反应。发现 Ni 在一定程度上两者都有。这些结果表明,即使在没有辅助因子或蛋白质催化剂的情况下,在与生物学相容的反应条件下,直接的金属离子催化的氨基转移也是高度有利的。

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