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丝氨酸/苏氨酸蛋白激酶Stk1对蛋白质组、抽搐运动及在……中的竞争优势的影响

Impacts of Ser/Thr Protein Kinase Stk1 on the Proteome, Twitching Motility, and Competitive Advantage in .

作者信息

Zhu Xuan, Feng Chao, Zhou Lantian, Li Zhenzhen, Zhang Yue, Pan Jianyi

机构信息

Zhejiang Provincial Key Laboratory of Silkworm Bioreactor and Biomedicine, College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou, China.

出版信息

Front Microbiol. 2021 Sep 22;12:738690. doi: 10.3389/fmicb.2021.738690. eCollection 2021.

DOI:10.3389/fmicb.2021.738690
PMID:34733256
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8560001/
Abstract

is a ubiquitous gram-negative bacterium in the environment and a leading cause of nosocomial infections worldwide. Therefore, it is listed by the WHO as a human pathogen that urgently needs the development of new antibacterial drugs. Recent findings have demonstrated that eukaryote-type Ser/Thr protein kinases play a vital role in regulating various bacterial physiological processes by catalyzing protein phosphorylation. Stk1 has proven to be a Ser/Thr protein kinase in . However, the regulatory roles of Stk1 have not yet been revealed. Thus, we constructed a knockout mutant (∆) from the PAO1 strain and employed a Tandem Mass Tag (TMT) labeling-based quantitative proteomic strategy to characterize proteome-wide changes in response to the knockout. In total, 620 differentially expressed proteins, among which 288 proteins were upregulated and 332 proteins were downregulated, were identified in ∆ compared with PAO1. A detailed bioinformatics analysis of these differentially expressed proteins was performed, including GO annotation, protein domain profile, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, subcellular localization and enrichment analysis. Notably, the downregulation of type IV pilus-related proteins and upregulation of T6SS-H1-related proteins were found in the ∆ strain, and the results were corroborated by quantitative PCR at the mRNA level. Further experiments confirmed that the loss of weakens bacterial twitching motility and promotes a growth competition advantage, which are, respectively, mediated by type IV pilus-related proteins and T6SS-H1-related proteins. These findings contribute to a better understanding of the physiological role of Stk1, and proteomic data will help further investigations of the roles and mechanisms of Stk1 in , although the detailed regulation and mechanism of Stk1 still need to be revealed.

摘要

是环境中一种普遍存在的革兰氏阴性细菌,也是全球医院感染的主要原因。因此,它被世界卫生组织列为急需开发新型抗菌药物的人类病原体。最近的研究发现表明,真核生物型丝氨酸/苏氨酸蛋白激酶通过催化蛋白质磷酸化在调节各种细菌生理过程中发挥着至关重要的作用。Stk1已被证明是中的一种丝氨酸/苏氨酸蛋白激酶。然而,Stk1的调节作用尚未被揭示。因此,我们从PAO1菌株构建了一个基因敲除突变体(∆),并采用基于串联质量标签(TMT)标记的定量蛋白质组学策略来表征响应基因敲除的全蛋白质组变化。与PAO1相比,在∆中总共鉴定出620种差异表达蛋白,其中288种蛋白上调,332种蛋白下调。对这些差异表达蛋白进行了详细的生物信息学分析,包括基因本体(GO)注释、蛋白质结构域图谱、京都基因与基因组百科全书(KEGG)通路分析、亚细胞定位和富集分析。值得注意的是,在∆菌株中发现IV型菌毛相关蛋白下调,T6SS-H1相关蛋白上调,并且在mRNA水平通过定量PCR证实了结果。进一步的实验证实,基因缺失削弱了细菌的颤动运动性并促进了生长竞争优势,这分别由IV型菌毛相关蛋白和T6SS-H1相关蛋白介导。这些发现有助于更好地理解Stk1的生理作用,并且蛋白质组学数据将有助于进一步研究Stk1在中的作用和机制,尽管Stk1的详细调节和机制仍有待揭示。

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