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对居住在澳大利亚放射性遗留场地的基因组学见解。

Genomic Insights Into the Inhabiting an Australian Radioactive Legacy Site.

作者信息

Vázquez-Campos Xabier, Kinsela Andrew S, Bligh Mark W, Payne Timothy E, Wilkins Marc R, Waite T David

机构信息

NSW Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, NSW, Australia.

UNSW Water Research Centre, School of Civil and Environmental Engineering, The University of New South Wales, Sydney, NSW, Australia.

出版信息

Front Microbiol. 2021 Oct 18;12:732575. doi: 10.3389/fmicb.2021.732575. eCollection 2021.

Abstract

During the 1960s, small quantities of radioactive materials were co-disposed with chemical waste at the Little Forest Legacy Site (LFLS, Sydney, Australia). The microbial function and population dynamics in a waste trench during a rainfall event have been previously investigated revealing a broad abundance of candidate and potentially undescribed taxa in this iron-rich, radionuclide-contaminated environment. Applying genome-based metagenomic methods, we recovered 37 refined archaeal MAGs, mainly from undescribed DPANN lineages without standing in nomenclature and ' Methanoperedenaceae' (ANME-2D). Within the undescribed DPANN, the newly proposed orders ' Gugararchaeales', ' Burarchaeales' and ' Anstonellales', constitute distinct lineages with a more comprehensive central metabolism and anabolic capabilities within the ' Micrarchaeota' phylum compared to most other DPANN. The analysis of new and extant ' Methanoperedens spp.' MAGs suggests metal ions as the ancestral electron acceptors during the anaerobic oxidation of methane while the respiration of nitrate/nitrite via molybdopterin oxidoreductases would have been a secondary acquisition. The presence of genes for the biosynthesis of polyhydroxyalkanoates in most ' Methanoperedens' also appears to be a widespread characteristic of the genus for carbon accumulation. This work expands our knowledge about the roles of the at the LFLS, especially, DPANN and ' Methanoperedens', while exploring their diversity, uniqueness, potential role in elemental cycling, and evolutionary history.

摘要

在20世纪60年代,少量放射性物质与化学废物在小森林遗留场地(澳大利亚悉尼的LFLS)共同处置。此前已经对降雨事件期间一个废物沟渠中的微生物功能和种群动态进行了研究,结果显示在这个富含铁、受放射性核素污染的环境中存在大量候选且可能未被描述的分类群。应用基于基因组的宏基因组学方法,我们获得了37个精细的古菌宏基因组组装基因组(MAGs),主要来自未被描述的DPANN谱系(尚无命名)和“甲烷厌氧氧化菌科”(ANME-2D)。在未被描述的DPANN中,新提出的“古糖菌目”“布尔古菌目”和“安斯顿菌目”,与大多数其他DPANN相比,在“微小古菌门”内构成了具有更全面中心代谢和合成代谢能力的独特谱系。对新的和现存的“甲烷厌氧氧化菌属”MAGs的分析表明,在甲烷厌氧氧化过程中金属离子是原始电子受体,而通过钼蝶呤氧化还原酶进行的硝酸盐/亚硝酸盐呼吸是次生获得的。大多数“甲烷厌氧氧化菌”中存在聚羟基脂肪酸酯生物合成基因,这似乎也是该属碳积累的一个普遍特征。这项工作扩展了我们对LFLS中微生物作用的认识,特别是DPANN和“甲烷厌氧氧化菌属”,同时探索了它们的多样性、独特性、在元素循环中的潜在作用以及进化历史。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6add/8561730/9474b990cae3/fmicb-12-732575-g001.jpg

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