Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, China.
Guangdong Provincial Key Laboratory of Proteomics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, China.
Mol Biol Evol. 2021 Aug 23;38(9):4039-4042. doi: 10.1093/molbev/msab166.
We present the ggtreeExtra package for visualizing heterogeneous data with a phylogenetic tree in a circular or rectangular layout (https://www.bioconductor.org/packages/ggtreeExtra). The package supports more data types and visualization methods than other tools. It supports using the grammar of graphics syntax to present data on a tree with richly annotated layers and allows evolutionary statistics inferred by commonly used software to be integrated and visualized with external data. GgtreeExtra is a universal tool for tree data visualization. It extends the applications of the phylogenetic tree in different disciplines by making more domain-specific data to be available to visualize and interpret in the evolutionary context.
我们介绍了 ggtreeExtra 包，它用于以圆形或矩形布局可视化具有系统发育树的异质数据（https://www.bioconductor.org/packages/ggtreeExtra）。该包支持比其他工具更多的数据类型和可视化方法。它支持使用图形语法呈现带有丰富注释层的树上的数据，并允许将常用软件推断的进化统计信息与外部数据集成和可视化。ggtreeExtra 是树数据可视化的通用工具。它通过使更多特定于领域的数据可用于可视化和解释进化背景，扩展了系统发育树在不同学科中的应用。
