Ma Bing-Zhi, Li Dong, Wang Hai-Yang, Tang Yong-He, Bai Dong, He Jun, Liu Xiao
Department of Pharmacy, China-Japan Friendship Hospital Beijing 100029, China.
Institute of Basic Theory, China Academy of Chinese Medical Sciences Beijing 100700, China.
Zhongguo Zhong Yao Za Zhi. 2021 Oct;46(20):5330-5340. doi: 10.19540/j.cnki.cjcmm.20210703.401.
This paper aims to explore active components and mechanism of Scutellariae Radix(SR)-Phellodendri Chinensis Cortex(PCC) drug pair in treatment of psoriasis by network pharmacology and molecular docking. Specifically, the chemical components of SR and PCC were retrieved from literature and TCMSP, as well as targets of these components from PharmMapper and UniProt, and the targets related to psoriasis from OMIM, TTD, PharmGkb, and DrugBank. Then the chemical component-medicinal target, protein-protein interaction(PPI), and chemical component-psoriasis target networks were constructed by Cytoscape. Gene ontology(GO) term enrichment analysis and Kyoto encyclopedia of genes and genomes(KEGG) pathway enrichment analysis were performed based on Metascape. Finally, molecular docking of the chemical components(high degree) with core therapeutic targets was carried out by AutoDock vina. The results showed 88 compounds of SR and PCC(including baicalin, wogonoside, berberine and phellodendrine) and 30 targets of the pair in the treatment of psoriasis. The 30 targets mainly involved the biological processes such as neutrophil mediated immunity(GO: 0002446) and T cell activation(GO: 0042110), and the signaling pathways such as metabolism of xenobiotics by cytochrome P450(hsa00980), apoptosis(hsa04210), and PI3 K-Akt signaling pathway(hsa04151). The results of molecular docking demonstrated that the main active components can spontaneously bind to the targets and the binding energy of 46 components with epidermal growth factor receptor(EGFR) was less than-8 kcal·mol~(-1). According to the PPI analysis, EGFR may be a key target for the treatment of psoriasis. Active components such as baicalin and berberine had high binding affinity with EGFR. This study preliminarily revealed the multi-component, multi-target and multi-pathway mechanism of SR-PCC drug pair in the treatment of psoriasis, which provided theoretical basis for the research on the mechanism of the drug pair in the treatment of psoriasis.
本文旨在通过网络药理学和分子对接技术,探讨黄芩-黄柏药对治疗银屑病的活性成分及作用机制。具体而言,从文献和中药系统药理学数据库(TCMSP)中检索黄芩和黄柏的化学成分,以及这些成分在药物靶点预测数据库(PharmMapper)和通用蛋白质数据库(UniProt)中的靶点,同时从人类孟德尔遗传数据库(OMIM)、治疗靶点数据库(TTD)、药物基因组学知识库(PharmGkb)和药物银行(DrugBank)中检索与银屑病相关的靶点。然后,利用Cytoscape构建化学成分-药物靶点、蛋白质-蛋白质相互作用(PPI)以及化学成分-银屑病靶点网络。基于Metascape进行基因本体(GO)术语富集分析和京都基因与基因组百科全书(KEGG)通路富集分析。最后,通过AutoDock vina对化学成分(高度相关)与核心治疗靶点进行分子对接。结果显示,黄芩和黄柏共有88种化合物(包括黄芩苷、汉黄芩苷、小檗碱和黄柏碱)以及30个治疗银屑病的靶点。这30个靶点主要涉及中性粒细胞介导的免疫(GO: 0002446)和T细胞活化(GO: 0042110)等生物学过程,以及细胞色素P450对外源生物的代谢(hsa00980)、细胞凋亡(hsa04210)和PI3K-Akt信号通路(hsa04151)等信号通路。分子对接结果表明,主要活性成分能够自发结合到靶点上,46种成分与表皮生长因子受体(EGFR)的结合能小于-8 kcal·mol~(-1)。根据PPI分析,EGFR可能是治疗银屑病的关键靶点。黄芩苷和小檗碱等活性成分与EGFR具有较高的结合亲和力。本研究初步揭示了黄芩-黄柏药对治疗银屑病的多成分、多靶点、多途径作用机制,为进一步研究该药对治疗银屑病的作用机制提供了理论依据。