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基于网络药理学和分子对接的熟地黄治疗骨关节炎作用机制研究

[Study on mechanism of Rehmanniae Radix Praeparata for treatment of osteoarthritis based on network pharmacology and molecular docking].

作者信息

Feng Wen-Qing, Liu Kai-Yang, Zhang Jia-Ning, Li Yong-Zhi, Liu Jun-Lian, Lu Jian-Qiu, Zhang Yan-Ling

机构信息

State Administration of Traditional Chinese Medicine, Engineering Research Center of Traditional Chinese Medicine-Information,School of Chinese Materia Medica, Beijing University of Chinese Medicine Beijing 102488, China.

China Astronaut Research and Training Center Beijing 100094, China.

出版信息

Zhongguo Zhong Yao Za Zhi. 2022 Oct;47(19):5336-5343. doi: 10.19540/j.cnki.cjcmm.20220427.401.

Abstract

The mechanism of Rehmanniae Radix Praeparata against osteoarthritis was investigated based on network pharmacology, molecular docking, and in vitro experiments in the present study. Osteoclast models were established via receptor activator of nuclear factor-κB ligand(RANKL) and macrophage colony-stimulating factor(M-CSF) inducing RAW264.7 cells. Further, the influence of Rehmanniae Radix Praeparata on the activity of tartrate-resistant acid phosphatase(TRAP) was evaluated and the efficacy of Rehmanniae Radix Praeparata in the treatment of osteoarthritis was verified. The active components of Rehmanniae Radix Praeparata were obtained from Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform(TCMSP) and literature, and the potential targets of the components were collected from SwissTargetPrediction. Osteoarthritis disease targets were searched in Online Mendelian Inheritance in Man(OMIM), Therapeutic Target Database(TTD), GeneCards, and DisGeNET. The intersection targets of Rehmanniae Radix Praeparata and osteoarthritis were obtained by Venny platform. The protein-protein interaction(PPI) network was constructed by Cytoscape 3.8.2, and key targets were obtained based on topology algorithm. The Database for Annotation, Visualization and Integrated Discovery(DAVID) was used to perform Gene Ontology(GO) and Kyoto Encyclopedia of Genes and Genomes(KEGG) pathway enrichment analysis. Finally, the mRNA expression of the key targets was determined by RT-qPCR and the binding activity between the components and key targets was validated by molecular docking. The results showed that Rehmanniae Radix Prae-parata inhibited the TRAP activity, thus inhibiting bone resorption by osteoclasts and treating osteoarthritis. By network pharmacology, 14 active components of Rehmanniae Radix Praeparata and 126 intersection targets were obtained. The network pharmacology enrichment results revealed 432 biological processes and 139 signaling pathways. Key targets such as proto-oncogene tyrosine-protein kinase Src(SRC), signal transducer and activator of transcription 3(STAT3) and transcription factor p65(RELA) were obtained according to the degree in topological analysis. SRC was highly expressed in osteoclasts, which accelerated the development of osteoarthritis. Therefore, SRC was selected for subsequent verification, and Rehmanniae Radix Praeparata decreased the gene expression level of SRC. The molecular docking showed that acteoside, isoacteoside, raffinose had good bonding activity with SRC, suggesting that they might be the critical components in treating osteoarthritis. In conclusion, Rehmanniae Radix Praeparata can inhibit bone resorption by osteoclasts and balance the metabolism of articular cartilage and subchondral bone via acting on SRC, thus playing a therapeutic role in osteoarthritis. In addition, Rehmanniae Radix Praeparata may exert overall efficacy on osteoarthritis through other targets such as STAT3 and RELA, and other related pathways such as PI3 K-AKT and IL-17 signaling pathways.

摘要

本研究基于网络药理学、分子对接和体外实验,对熟地黄抗骨关节炎的作用机制进行了研究。通过核因子κB受体活化因子配体(RANKL)和巨噬细胞集落刺激因子(M-CSF)诱导RAW264.7细胞建立破骨细胞模型。此外,评估了熟地黄对耐酒石酸酸性磷酸酶(TRAP)活性的影响,并验证了熟地黄治疗骨关节炎的疗效。熟地黄的活性成分从中药系统药理学数据库和分析平台(TCMSP)及文献中获取,其成分的潜在靶点从SwissTargetPrediction收集。在《人类孟德尔遗传在线》(OMIM)、治疗靶点数据库(TTD)、基因卡片(GeneCards)和疾病基因数据库(DisGeNET)中检索骨关节炎疾病靶点。通过Venny平台获得熟地黄与骨关节炎的交集靶点。利用Cytoscape 3.8.2构建蛋白质-蛋白质相互作用(PPI)网络,并基于拓扑算法获得关键靶点。使用注释、可视化和综合发现数据库(DAVID)进行基因本体(GO)和京都基因与基因组百科全书(KEGG)通路富集分析。最后,通过RT-qPCR测定关键靶点的mRNA表达,并通过分子对接验证成分与关键靶点之间的结合活性。结果表明,熟地黄抑制TRAP活性,从而抑制破骨细胞的骨吸收,治疗骨关节炎。通过网络药理学,获得了熟地黄的14种活性成分和126个交集靶点。网络药理学富集结果揭示了432个生物学过程和139条信号通路。根据拓扑分析中的度数,获得了原癌基因酪氨酸蛋白激酶Src(SRC)、信号转导子和转录激活子3(STAT3)和转录因子p65(RELA)等关键靶点。SRC在破骨细胞中高表达,加速了骨关节炎的发展。因此,选择SRC进行后续验证,熟地黄降低了SRC的基因表达水平。分子对接表明,毛蕊花糖苷、异毛蕊花糖苷、棉子糖与SRC具有良好的结合活性,表明它们可能是治疗骨关节炎的关键成分。总之,熟地黄可通过作用于SRC抑制破骨细胞的骨吸收,平衡关节软骨和软骨下骨的代谢,从而在骨关节炎中发挥治疗作用。此外,熟地黄可能通过STAT3和RELA等其他靶点以及PI3K-AKT和IL-17信号通路等其他相关途径对骨关节炎发挥整体疗效。

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