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用于纳米分辨率断层扫描重建的基于深度学习的图像配准

Deep-learning-based image registration for nano-resolution tomographic reconstruction.

作者信息

Fu Tianyu, Zhang Kai, Wang Yan, Li Jizhou, Zhang Jin, Yao Chunxia, He Qili, Wang Shanfeng, Huang Wanxia, Yuan Qingxi, Pianetta Piero, Liu Yijin

机构信息

Beijing Synchrotron Radiation Facility, X-ray Optics and Technology Laboratory, Institute of High Energy Physics, Chinese Academy of Sciences, Yuquan Road, Shijingshan District, Beijing 100043, People's Republic of China.

Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.

出版信息

J Synchrotron Radiat. 2021 Nov 1;28(Pt 6):1909-1915. doi: 10.1107/S1600577521008481. Epub 2021 Sep 13.

Abstract

Nano-resolution full-field transmission X-ray microscopy has been successfully applied to a wide range of research fields thanks to its capability of non-destructively reconstructing the 3D structure with high resolution. Due to constraints in the practical implementations, the nano-tomography data is often associated with a random image jitter, resulting from imperfections in the hardware setup. Without a proper image registration process prior to the reconstruction, the quality of the result will be compromised. Here a deep-learning-based image jitter correction method is presented, which registers the projective images with high efficiency and accuracy, facilitating a high-quality tomographic reconstruction. This development is demonstrated and validated using synthetic and experimental datasets. The method is effective and readily applicable to a broad range of applications. Together with this paper, the source code is published and adoptions and improvements from our colleagues in this field are welcomed.

摘要

纳米分辨率全场透射X射线显微镜凭借其能够以高分辨率无损重建三维结构的能力,已成功应用于广泛的研究领域。由于实际应用中的限制,纳米断层扫描数据常常伴随着随机图像抖动,这是由硬件设置中的缺陷导致的。在重建之前,如果没有适当的图像配准过程,结果的质量将会受到影响。本文提出了一种基于深度学习的图像抖动校正方法,该方法能够高效、准确地配准投影图像,有助于高质量的断层重建。利用合成数据集和实验数据集对这一进展进行了演示和验证。该方法有效且易于应用于广泛的应用场景。本文同时发布了源代码,欢迎该领域的同行采用和改进。

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