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生物发育中近似对称的识别。

Identification of approximate symmetries in biological development.

机构信息

Department of Mathematics and Applied Mathematics, Virginia Commonwealth University, Richmond, VA, USA.

Department of Mathematics and Department of Biology, Duke University, Durham, NC, USA.

出版信息

Philos Trans A Math Phys Eng Sci. 2021 Dec 27;379(2213):20200273. doi: 10.1098/rsta.2020.0273. Epub 2021 Nov 8.

Abstract

Virtually all forms of life, from single-cell eukaryotes to complex, highly differentiated multicellular organisms, exhibit a property referred to as symmetry. However, precise measures of symmetry are often difficult to formulate and apply in a meaningful way to biological systems, where symmetries and asymmetries can be dynamic and transient, or be visually apparent but not reliably quantifiable using standard measures from mathematics and physics. Here, we present and illustrate a novel measure that draws on concepts from information theory to quantify the degree of symmetry, enabling the identification of approximate symmetries that may be present in a pattern or a biological image. We apply the measure to rotation, reflection and translation symmetries in patterns produced by a Turing model, as well as natural objects (algae, flowers and leaves). This method of symmetry quantification is unbiased and rigorous, and requires minimal manual processing compared to alternative measures. The proposed method is therefore a useful tool for comparison and identification of symmetries in biological systems, with potential future applications to symmetries that arise during development, as observed or as produced by mathematical models. This article is part of the theme issue 'Recent progress and open frontiers in Turing's theory of morphogenesis'.

摘要

实际上,从单细胞真核生物到复杂的高度分化的多细胞生物,所有形式的生命都表现出一种被称为对称的特性。然而,在生物学系统中,对称和不对称可能是动态和瞬时的,或者在视觉上是明显的,但使用数学和物理学的标准度量方法却无法可靠地量化,因此精确的对称度量方法往往难以制定和有意义地应用。在这里,我们提出并说明了一种新的度量方法,该方法借鉴了信息论的概念来量化对称程度,从而能够识别模式或生物图像中可能存在的近似对称。我们将该度量方法应用于图灵模型生成的图案中的旋转、反射和平移对称,以及自然物体(藻类、花朵和叶子)。与替代度量方法相比,这种对称量化方法具有无偏性和严格性,并且需要最小的手动处理。因此,该方法是比较和识别生物系统中对称的有用工具,具有在发育过程中观察到的或由数学模型产生的对称的潜在未来应用。本文是主题为“图灵形态发生理论的最新进展和前沿领域”的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/740d/8580469/8ce6a5f4ee7c/rsta20200273f01.jpg

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