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膜翅目基因组数据库:新的基因组和注释数据集,可提高 GO 富集和直系同源分析的准确性。

Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses.

机构信息

Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA.

Division of Plant Science & Technology, University of Missouri, Columbia, MO 65211, USA.

出版信息

Nucleic Acids Res. 2022 Jan 7;50(D1):D1032-D1039. doi: 10.1093/nar/gkab1018.

Abstract

We report an update of the Hymenoptera Genome Database (HGD; http://HymenopteraGenome.org), a genomic database of hymenopteran insect species. The number of species represented in HGD has nearly tripled, with fifty-eight hymenopteran species, including twenty bees, twenty-three ants, eleven wasps and four sawflies. With a reorganized website, HGD continues to provide the HymenopteraMine genomic data mining warehouse and JBrowse/Apollo genome browsers integrated with BLAST. We have computed Gene Ontology (GO) annotations for all species, greatly enhancing the GO annotation data gathered from UniProt with more than a ten-fold increase in the number of GO-annotated genes. We have also generated orthology datasets that encompass all HGD species and provide orthologue clusters for fourteen taxonomic groups. The new GO annotation and orthology data are available for searching in HymenopteraMine, and as bulk file downloads.

摘要

我们报告了膜翅目昆虫基因组数据库(Hymenoptera Genome Database,HGD;http://HymenopteraGenome.org)的更新,这是一个膜翅目昆虫物种的基因组数据库。HGD 中代表的物种数量增加了近两倍,包括 58 种膜翅目昆虫,其中 20 种是蜜蜂,23 种是蚂蚁,11 种是黄蜂,4 种是锯蝇。通过重新组织网站,HGD 继续提供 HymenopteraMine 基因组数据挖掘仓库和与 BLAST 集成的 JBrowse/Apollo 基因组浏览器。我们已经为所有物种计算了基因本体论(GO)注释,大大增强了从 UniProt 收集的 GO 注释数据,GO 注释基因的数量增加了十倍以上。我们还生成了涵盖所有 HGD 物种的同源数据集,并为 14 个分类群提供了同源簇。新的 GO 注释和同源数据集可在 HymenopteraMine 中搜索,并可作为批量文件下载。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc9c/8728238/46ce0083fc7a/gkab1018fig1.jpg

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