APC Microbiome Ireland, University College Cork, Cork, Co. Cork, T12 YT20, Ireland.
Quadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.
Microb Genom. 2021 Nov;7(11). doi: 10.1099/mgen.0.000686.
The vast majority of described prokaryotic viruses have double-stranded or single-stranded DNA or double-stranded RNA genomes. Until 2020, a mere four prokaryotic single-stranded, positive-sense RNA viruses have been classified in two genera (). Several recent metagenomic and metatranscriptomic studies revealed a vastly greater diversity of these viruses in prokaryotic soil communities than ever anticipated. Phylogenetic analysis of these newly discovered viruses prompted the reorganization of class , now renamed , to include two orders, and , and a total of six families, 428 genera and 882 species. Here we outline the new taxonomy of , approved and ratified in 2021 by the International Committee on Taxonomy of Viruses, and describe open-access hidden Markov models to accommodate the anticipated identification and future classification of hundreds, if not thousands, of additional class members into this new taxonomic framework.
绝大多数描述的原核病毒具有双链或单链 DNA 或双链 RNA 基因组。截至 2020 年,仅有四种原核单链、正链 RNA 病毒被归类在两个属中()。最近的几项宏基因组学和宏转录组学研究表明,在原核土壤群落中,这些病毒的多样性比预期的要大得多。对这些新发现的病毒的系统发育分析促使对类进行了重新组织,现在更名为,包括两个目,和,以及总共六个科、428 个属和 882 个种。在这里,我们概述了 2021 年由国际病毒分类学委员会批准和认可的新分类法,并描述了开放获取的隐马尔可夫模型,以适应预期的识别和未来将数百种(如果不是数千种)新分类成员归入这一新的分类框架。