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属名. 新种名.,一种从潮间带藻类草皮表面分离得到的新型褐藻胶降解菌。

gen. nov., sp. nov., a novel alginate-degrading bacterium isolated from the surface of intertidal algal turf.

机构信息

Centre for Chemical Biology, Universiti Sains Malaysia, Penang, Malaysia.

出版信息

Int J Syst Evol Microbiol. 2021 Nov;71(11). doi: 10.1099/ijsem.0.005087.

Abstract

A novel rod-shaped, Gram-stain-negative, strictly aerobic and alginate-degrading marine bacterium, designated CCB-QB4, was isolated from a surface of algal turf collected from a coastal area of Penang, Malaysia. The cells showed motility by a lateral flagellum. The rod-shaped cells formed long chains end-to-end. Phylogenetic analysis based on the 16S rRNA gene sequence of strain CCB-QB4 showed 94.07, 92.69, 91.52 and 90.90 % sequence similarity to RQJ05, Q1, YM01 and D2, respectively. Strain CCB-QB4 formed a cluster with RQJ05. Strain CCB-QB4 was catalase-negative, oxidase-positive, and degraded agar, alginate, and starch. Cell growth was observed at 15-40 °C, at pH 7.0-10.0 and in the presence of 1-6 % (w/v) NaCl and glucose. The major fatty acids were summed feature 3 (C ω7/iso-C 2-OH), C and C ω7. The polar lipids were phosphatidylethanolamine, two unidentified aminolipids, two unidentified glycolipids, an unidentified phospholipid and unidentified lipid. The major respiratory quinone was ubiquinone-8. The genomic DNA G+C content was 46.7 mol%. Based on the phenotypic, chemotaxonomic and phylogenetic data, strain CCB-BQ4 represents a novel species in a new genus, for which the name gen. nov., sp. nov. is proposed. The type strain is CCB-QB4 (=JCM 33513=CCB-MBL 5008).

摘要

一株新型的杆状、革兰氏阴性、严格需氧和能降解褐藻胶的海洋细菌,被命名为 CCB-QB4,从马来西亚槟城沿海地区采集的藻苔表面分离得到。细胞通过侧鞭毛运动。杆状细胞形成长链,首尾相连。基于菌株 CCB-QB4 的 16S rRNA 基因序列的系统发育分析显示,其与 RQJ05、Q1、YM01 和 D2 的序列相似性分别为 94.07%、92.69%、91.52%和 90.90%。菌株 CCB-QB4 与 RQJ05 形成一个聚类。CCB-QB4 菌株为过氧化氢酶阴性,氧化酶阳性,能降解琼脂、褐藻胶和淀粉。在 15-40°C、pH 7.0-10.0 和 1-6%(w/v)NaCl 和葡萄糖存在的条件下观察到细胞生长。主要脂肪酸为 summed feature 3 (C ω7/iso-C 2-OH)、C 和 C ω7。极性脂为磷脂酰乙醇胺、两种未鉴定的胺脂、两种未鉴定的糖脂、一种未鉴定的磷脂和未鉴定的脂类。主要呼吸醌为泛醌-8。基因组 DNA G+C 含量为 46.7mol%。基于表型、化学分类和系统发育数据,菌株 CCB-BQ4 代表一个新属中的一个新种,建议采用新属名和新种名。模式菌株为 CCB-QB4(=JCM 33513=CCB-MBL 5008)。

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