Fraunhofer Institute for Toxicology and Experimental Medicine, Chemical Safety and Toxicology, Germany.
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark.
Toxicol In Vitro. 2022 Mar;79:105269. doi: 10.1016/j.tiv.2021.105269. Epub 2021 Oct 29.
Read-across approaches often remain inconclusive as they do not provide sufficient evidence on a common mode of action across the category members. This read-across case study on thirteen, structurally similar, branched aliphatic carboxylic acids investigates the concept of using human-based new approach methods, such as in vitro and in silico models, to demonstrate biological similarity. Five out of the thirteen analogues have preclinical in vivo studies. Three out of them induced lipid accumulation or hypertrophy in preclinical studies with repeated exposure, which leads to the read-across hypothesis that the analogues can potentially induce hepatic steatosis. To confirm the selection of analogues, the expression patterns of the induced differentially expressed genes (DEGs) were analysed in a human liver model. With increasing dose, the expression pattern within the tested analogues got more similar, which serves as a first indication of a common mode of action and suggests differences in the potency of the analogues. Hepatic steatosis is a well-known adverse outcome, for which over 55 adverse outcome pathways have been identified. The resulting adverse outcome pathway (AOP) network, comprised a total 43 MIEs/KEs and enabled the design of an in vitro testing battery. From the AOP network, ten MIEs, early and late KEs were tested to systematically investigate a common mode of action among the grouped compounds. The targeted testing of AOP specific MIE/KEs shows that biological activity in the category decreases with side chain length. A similar trend was evident in measuring liver alterations in zebra fish embryos. However, activation of single MIEs or early KEs at in vivo relevant doses did not necessarily progress to the late KE "lipid accumulation". KEs not related to the read-across hypothesis, testing for example general mitochondrial stress responses in liver cells, showed no trend or biological similarity. Testing scope is a key issue in the design of in vitro test batteries. The Dempster-Shafer decision theory predicted those analogues with in vivo reference data correctly using one human liver model or the CALUX reporter assays. The case study shows that the read-across hypothesis is the key element to designing the testing strategy. In the case of a good mechanistic understanding, an AOP facilitates the selection of reliable human in vitro models to demonstrate a common mode of action. Testing DEGs, MIEs and early KEs served to show biological similarity, whereas the late KEs become important for confirmation, as progression from MIEs to AO is not always guaranteed.
当涉及到跨类别成员的共同作用模式时,读跨方法往往无法得出充分的证据,因此结论并不确定。本研究对 13 种结构相似的支链脂肪族羧酸进行了读跨案例研究,以探讨使用基于人体的新方法,如体外和计算模型,来证明生物学相似性的概念。这 13 种类似物中有 5 种具有临床前体内研究。其中 3 种在重复暴露的临床前研究中诱导了脂肪堆积或肥大,这导致了读跨假设,即类似物可能潜在地诱导肝脂肪变性。为了确认类似物的选择,在人类肝脏模型中分析了诱导差异表达基因 (DEGs) 的表达模式。随着剂量的增加,测试类似物内的表达模式变得更加相似,这首先表明存在共同作用模式,并表明类似物的效力存在差异。肝脂肪变性是一种众所周知的不良后果,为此已经确定了超过 55 种不良后果途径。由此产生的不良后果途径 (AOP) 网络共包含 43 个 MIEs/KEs,并能够设计体外测试组合。从 AOP 网络中,测试了 10 个 MIEs、早期和晚期 KEs,以系统地研究分组化合物中的共同作用模式。针对 AOP 特定的 MIE/KEs 的靶向测试表明,随着侧链长度的增加,类别中的生物活性降低。在斑马鱼胚胎中测量肝改变时,也出现了类似的趋势。然而,在体内相关剂量下激活单个 MIE 或早期 KEs 并不一定会导致晚期 KE“脂肪堆积”。与读跨假设无关的 KEs,例如测试肝细胞中的一般线粒体应激反应,没有显示出趋势或生物学相似性。测试范围是设计体外测试组合的关键问题。Dempster-Shafer 决策理论使用一个人类肝脏模型或 CALUX 报告基因检测法正确预测了具有体内参考数据的类似物。案例研究表明,读跨假设是设计测试策略的关键要素。在具有良好的机制理解的情况下,AOP 有助于选择可靠的人体体外模型来证明共同作用模式。测试 DEGs、MIEs 和早期 KEs 用于显示生物学相似性,而晚期 KEs 对于确认变得重要,因为从 MIEs 到 AO 的进展并不总是有保证的。