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Cel5H蛋白表面氨基酸在与粘土矿物结合中的作用及其作用力的测量。

Role of Cel5H protein surface amino acids in binding with clay minerals and measurements of its forces.

作者信息

Math Renukaradhya K, Bharatham Nagakumar, Javaregowda Palaksha K, Yun Han Dae

机构信息

SDM Research Institute for Biomedical Sciences, 5th Floor, Manjushree Building, SDM College of Medical Sciences & Hospital Campus, Shri Dharmasthala Manjunatheshwara University, Dharwad, Sattur, 580009, India.

Division of Applied Life Sciences, Gyeongsang National University, Chinju, 660701, Republic of Korea.

出版信息

Appl Microsc. 2021 Nov 11;51(1):17. doi: 10.1186/s42649-021-00066-7.

Abstract

Our previous study on the binding activity between Cel5H and clay minerals showed highest binding efficiency among other cellulase enzymes cloned. Here, based on previous studies, we hypothesized that the positive amino acids on the surface of Cel5H protein may play an important role in binding to clay surfaces. To examine this, protein sequences of Bacillus licheniformis Cel5H (BlCel5H) and Paenibacillus polymyxa Cel5A (PpCel5A) were analyzed and then selected amino acids were mutated. These mutated proteins were investigated for binding activity and force measurement via atomic force microscopy (AFM). A total of seven amino acids which are only present in BlCel5H but not in PpCel5A were selected for mutational studies and the positive residues which are present in both were omitted. Of the seven selected surface lysine residues, only three mutants K196A(M2), K54A(M3) and K157T(M4) showed 12%, 7% and 8% less clay mineral binding ability, respectively compared with wild-type. The probable reason why other mutants did not show altered binding efficiency might be due to relative location of amino acids on the protein surface. Meanwhile, measurement of adhesion forces on mica sheets showed a well-defined maximum at 69 ± 19 pN for wild-type, 58 ± 19 pN for M2, 53 ± 19 pN for M3, and 49 ± 19 pN for M4 proteins. Hence, our results demonstrated that relative location of surface amino acids of Cel5H protein especially positive charged amino acids are important in the process of clay mineral-protein binding interaction through electrostatic exchange of charges.

摘要

我们之前关于Cel5H与黏土矿物结合活性的研究表明,在克隆的其他纤维素酶中,其结合效率最高。在此,基于之前的研究,我们推测Cel5H蛋白表面的带正电氨基酸可能在与黏土表面的结合中起重要作用。为了验证这一点,我们分析了地衣芽孢杆菌Cel5H(BlCel5H)和多粘芽孢杆菌Cel5A(PpCel5A)的蛋白质序列,然后对选定的氨基酸进行了突变。通过原子力显微镜(AFM)研究了这些突变蛋白的结合活性和力的测量。总共选择了7个仅存在于BlCel5H而不存在于PpCel5A中的氨基酸进行突变研究,同时省略了两者都存在的带正电残基。在选定的7个表面赖氨酸残基中,只有3个突变体K196A(M2)、K54A(M3)和K157T(M4)与野生型相比,黏土矿物结合能力分别降低了12%、7%和8%。其他突变体未显示结合效率改变的可能原因可能是氨基酸在蛋白质表面的相对位置。同时,在云母片上测量的粘附力显示,野生型在69±19 pN处有一个明确的最大值,M2为58±19 pN,M3为53±19 pN,M4蛋白为49±19 pN。因此,我们的结果表明,Cel5H蛋白表面氨基酸尤其是带正电氨基酸的相对位置在通过电荷静电交换的黏土矿物 - 蛋白质结合相互作用过程中很重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f62b/8586110/d94eed84784b/42649_2021_66_Fig1_HTML.jpg

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