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sp. nov.,分离自红树林沉积物。

sp. nov., isolated from mangrove sediment.

机构信息

Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, State Key Laboratory Breeding Base of Marine Genetic Resources, Fujian Key Laboratory of Marine Genetic Resources, Xiamen 361005, PR China.

Faculty of Agriculture and Food, Kunming University of Science and Technology, Kunming 650500, PR China.

出版信息

Int J Syst Evol Microbiol. 2021 Nov;71(11). doi: 10.1099/ijsem.0.005079.

Abstract

A novel marine bacterium, designated strain CHFG3-1-5, was isolated from mangrove sediment sampled at Jiulong River estuary, Fujian, PR China. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain CHFG3-1-5 belonged to the genus , with the highest sequence similarity to SS011B1-4 (97.6%), followed by D15-8W (97.5%), T17 (97.1%) and SP.17 (90.6%). The bacterium was Gram-stain-negative, facultative anaerobic, oxidase- and catalase-positive, rod-shaped and motile with a polar flagellum. Strain CHFG3-1-5 grew optimally at 32-37 °C, pH 6.0-8.0 and in the presence of 2.0-3.0% (w/v) NaCl. The G+C content of the chromosomal DNA was 61.1 mol%. The major respiratory quinone was determined to be Q-9. The principal fatty acids were C, summed feature 3 (C 7/6), C, summed feature 9 (C iso 9 and/or C 10-methyl), C 3-OH and summed feature 8 (C 7 and/or C 6). The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, three phospholipids, one glycolipid and two aminolipids. The average nucleotide identity and digital DNA-DNA hybridization values among the genomes of strain CHFG3-1-5 and the reference strains were 73.4-79.4 and 19.6-22.4%, respectively. Like many other species reported in the genus , strain CHFG3-1-5 was able to oxidise iron. The combined genotypic and phenotypic data showed that strain CHFG3-1-5 represents a novel species within the genus , for which the name sp. nov. is proposed, with the type strain CHFG3-1-5 (=MCCC 1A18306=KCTC 82398).

摘要

一株新型海洋细菌,菌株 CHFG3-1-5,从中国福建九龙江河口的红树林沉积物中分离得到。基于 16S rRNA 基因序列的系统发育分析表明,菌株 CHFG3-1-5 属于 属,与 SS011B1-4 的序列相似度最高(97.6%),其次是 D15-8W(97.5%)、T17(97.1%)和 SP.17(90.6%)。该菌革兰氏染色阴性,兼性厌氧,氧化酶和触酶阳性,杆状,有极性鞭毛,运动。菌株 CHFG3-1-5 在 32-37°C、pH6.0-8.0 和 2.0-3.0%(w/v)NaCl 条件下生长最佳。其染色体 DNA 的 G+C 含量为 61.1mol%。主要呼吸醌为 Q-9。主要脂肪酸为 C 16:0、summed feature 3 (C 7/6)、C 18:1ω7c 和 summed feature 9 (C iso 9 和/或 C 10-methyl)、C 3-OH 和 summed feature 8 (C 7 和/或 C 6)。极性脂包括二磷脂酰甘油、磷脂酰乙醇胺、磷脂酰甘油、三种磷脂、一种甘油磷脂和两种胺脂。菌株 CHFG3-1-5 与参考菌株基因组之间的平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 73.4-79.4%和 19.6-22.4%。与该属中报道的许多其他种一样,菌株 CHFG3-1-5 能够氧化铁。综合基因型和表型数据表明,菌株 CHFG3-1-5 代表该属中的一个新种,建议命名为 sp. nov.,其模式菌株为 CHFG3-1-5(=MCCC 1A18306=KCTC 82398)。

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