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西南印度洋脊微生物铁氧化还原和矿物相互作用的宏基因组特征。

Metagenomic Features Characterized with Microbial Iron Oxidoreduction and Mineral Interaction in Southwest Indian Ridge.

机构信息

School of Oceanography, Shanghai Jiao Tong Universitygrid.16821.3c, Shanghai, PR China.

Key Laboratory of Marine Ecosystem Dynamics, Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China.

出版信息

Microbiol Spectr. 2022 Dec 21;10(6):e0061422. doi: 10.1128/spectrum.00614-22. Epub 2022 Oct 26.

DOI:10.1128/spectrum.00614-22
PMID:36286994
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9769843/
Abstract

The Southwest Indian Ridge (SWIR) is one of the typical representatives of deep-sea ultraslow-spreading ridges, and has increasingly become a hot spot of studying subsurface geological activities and deep-sea mining management. However, the understanding of microbial activities is still limited on active hydrothermal vent chimneys in SWIR. In this study, samples from an active black smoker and a diffuse vent located in the Longqi hydrothermal region were collected for deep metagenomic sequencing, which yielded approximately 290 GB clean data and 295 mid-to-high-quality metagenome-assembled genomes (MAGs). Sulfur oxidation conducted by a variety of Gammaproteobacteria, Alphaproteobacteria, and Campylobacterota was presumed to be the major energy source for chemosynthesis in Longqi hydrothermal vents. Diverse iron-related microorganisms were recovered, including iron-oxidizing Zetaproteobacteria, iron-reducing , and magnetotactic bacterium. Twenty-two bacterial MAGs from 12 uncultured phyla harbored iron oxidase Cyc2 homologs and enzymes for organic carbon degradation, indicated novel chemolithoheterotrophic iron-oxidizing bacteria that affected iron biogeochemistry in hydrothermal vents. Meanwhile, potential interactions between microbial communities and chimney minerals were emphasized as enriched metabolic potential of siderophore transportation, and extracellular electron transfer functioned by multi-heme proteins was discovered. Composition of chimney minerals probably affected microbial iron metabolic potential, as pyrrhotite might provide more available iron for microbial communities. Collectively, this study provides novel insights into microbial activities and potential mineral-microorganism interactions in hydrothermal vents. Microbial activities and interactions with minerals and venting fluid in active hydrothermal vents remain unclear in the ultraslow-spreading SWIR (Southwest Indian Ridge). Understanding about how minerals influence microbial metabolism is currently limited given the obstacles in cultivating microorganisms with sulfur or iron oxidoreduction functions. Here, comprehensive descriptions on microbial composition and metabolic profile on 2 hydrothermal vents in SWIR were obtained based on cultivation-free metagenome sequencing. In particular, autotrophic sulfur oxidation supported by minerals was presumed, emphasizing the role of chimney minerals in supporting chemosynthesis. Presence of novel heterotrophic iron-oxidizing bacteria was also indicated, suggesting overlooked biogeochemical pathways directed by microorganisms that connected sulfide mineral dissolution and organic carbon degradation in hydrothermal vents. Our findings offer novel insights into microbial function and biotic interactions on minerals in ultraslow-spreading ridges.

摘要

西南印度洋脊(SWIR)是深海超慢速扩张脊的典型代表之一,越来越成为研究地下地质活动和深海采矿管理的热点。然而,对 SWIR 中活动热液喷口烟囱内微生物活动的了解仍然有限。在这项研究中,从龙崎热液区的一个活动黑烟囱和一个弥散喷口采集了样品,进行了深度宏基因组测序,共获得约 290GB 的清洁数据和 295 个中高质量宏基因组组装基因组(MAGs)。推测各种γ变形菌、α变形菌和弯曲菌门的硫氧化作用是龙崎热液喷口化能合成的主要能源。回收了多种与铁有关的微生物,包括铁氧化的 Zetaproteobacteria、铁还原菌和磁细菌。来自 12 个未培养门的 22 个细菌 MAG 含有铁氧化酶 Cyc2 同源物和有机碳降解酶,表明影响热液喷口铁生物地球化学的新型化能异养铁氧化细菌。同时,强调了微生物群落与烟囱矿物之间的潜在相互作用,发现了铁载体运输的丰富代谢潜力和多血红素蛋白的细胞外电子转移功能。烟囱矿物的组成可能影响微生物的铁代谢潜力,因为磁黄铁矿可能为微生物群落提供更多可用的铁。总的来说,这项研究为热液喷口的微生物活动和潜在的矿物-微生物相互作用提供了新的见解。微生物活动和与矿物和热液喷口流体的相互作用在超慢速扩张的 SWIR(西南印度洋脊)中仍然不清楚。由于培养具有硫或铁氧化还原功能的微生物存在障碍,目前对矿物如何影响微生物代谢的理解有限。在这里,基于无培养宏基因组测序,获得了 SWIR 两个热液喷口微生物组成和代谢特征的综合描述。特别是,推测了以矿物为支撑的自养硫氧化作用,强调了烟囱矿物在支持化能合成中的作用。还表明存在新型异养铁氧化细菌,表明微生物连接热液喷口中硫化物矿物溶解和有机碳降解的被忽视的生物地球化学途径。我们的研究结果为超慢速扩张脊上微生物功能和矿物上生物相互作用提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b60/9769843/c2aae5a9f1b7/spectrum.00614-22-f006.jpg
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