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足月人类羊膜蛋白质组的综合定量表征

Comprehensive quantitative characterization of the human term amnion proteome.

作者信息

Avilla-Royo Eva, Gegenschatz-Schmid Katharina, Grossmann Jonas, Kockmann Tobias, Zimmermann Roland, Snedeker Jess Gerrit, Ochsenbein-Kölble Nicole, Ehrbar Martin

机构信息

Department of Obstetrics, University and University Hospital of Zurich, 8091 Zurich, Switzerland.

Institute for Biomechanics, Swiss Federal Institute of Technology, 8093 Zurich, Switzerland.

出版信息

Matrix Biol Plus. 2021 Sep 21;12:100084. doi: 10.1016/j.mbplus.2021.100084. eCollection 2021 Dec.

Abstract

The loss of fetal membrane (FM) integrity and function at an early time point during pregnancy can have devastating consequences for the fetus and the newborn. However, biomaterials for preventive sealing and healing of FMs are currently non-existing, which can be partly attributed to the current fragmentary knowledge of FM biology. Despite recent advances in proteomics analysis, a robust and comprehensive description of the amnion proteome is currently lacking. Here, by an optimized protein sample preparation and offline fractionation before liquid chromatography coupled to mass spectrometry (LC-MS) analysis, we present a characterization of the healthy human term amnion proteome, which covers more than 40% of the previously reported transcripts in similar RNA sequencing datasets and, with more than 5000 identifications, greatly outnumbers previous reports. Together, beyond providing a basis for the study of compromised and preterm ruptured FMs, this comprehensive human amnion proteome is a stepping-stone for the development of novel healing-inducing biomaterials. The proteomic dataset has been deposited in the ProteomeXchange Consortium with the identifier PXD019410.

摘要

孕期早期胎膜(FM)完整性和功能的丧失会对胎儿和新生儿产生毁灭性后果。然而,目前尚无用于预防性密封和愈合胎膜的生物材料,这在一定程度上归因于目前对胎膜生物学的零碎认识。尽管蛋白质组学分析最近取得了进展,但目前仍缺乏对羊膜蛋白质组的全面而有力的描述。在此,通过优化蛋白质样品制备以及在液相色谱-质谱联用(LC-MS)分析之前进行离线分级分离,我们展示了健康足月人羊膜蛋白质组的特征,该蛋白质组涵盖了之前在类似RNA测序数据集中报道的转录本的40%以上,并且有超过5000个鉴定结果,大大超过了之前的报道。总之,除了为受损和早产胎膜破裂的研究提供基础外,这个全面的人羊膜蛋白质组是开发新型促愈合生物材料的垫脚石。该蛋白质组数据集已存入蛋白质组交换联盟,标识符为PXD019410。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/8572956/58e93ad15c5b/gr1.jpg

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