Kovalishyn Vasyl, Zyabrev Volodymyr, Kachaeva Maryna, Ziabrev Kostiantyn, Keith Kathy, Harden Emma, Hartline Caroll, James Scott H, Brovarets Volodymyr
V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry, National Academy of Science of Ukraine, 1 Murmanska Str, Kyiv, 02094, Ukraine.
Institute of Organic Chemistry, National Academy of Sciences, 5, Murmanska Str, Kyiv, 02660, Ukraine.
J Comput Aided Mol Des. 2021 Dec;35(12):1177-1187. doi: 10.1007/s10822-021-00428-z. Epub 2021 Nov 12.
The problem of designing new antiviral drugs against Human Cytomegalovirus (HCMV) was addressed using the Online Chemical Modeling Environment (OCHEM). Data on compound antiviral activity to human organisms were collected from the literature and uploaded in the OCHEM database. The predictive ability of the regression models was tested through cross-validation, giving coefficient of determination q = 0.71-0.76. The validation of the models using an external test set proved that the models can be used to predict the activity of newly designed compounds with reasonable accuracy within the applicability domain (q = 0.70-0.74). The models were applied to screen a virtual chemical library of imidazole derivatives, which was designed to have antiviral activity. The six most promising compounds were identified, synthesized and their antiviral activities against HCMV were evaluated in vitro. However, only two of them showed some activity against the HCMV AD169 strain.
利用在线化学建模环境(OCHEM)解决了设计抗人巨细胞病毒(HCMV)新型抗病毒药物的问题。从文献中收集了化合物对人体抗病毒活性的数据,并上传到OCHEM数据库中。通过交叉验证测试回归模型的预测能力,得到决定系数q = 0.71 - 0.76。使用外部测试集对模型进行验证证明,在适用范围内,模型可用于以合理的准确度预测新设计化合物的活性(q = 0.70 - 0.74)。将模型应用于筛选设计具有抗病毒活性的咪唑衍生物虚拟化学文库。鉴定出六种最有前景的化合物,进行合成,并在体外评估它们对HCMV的抗病毒活性。然而,其中只有两种对HCMV AD169菌株表现出一定活性。