Department of Chemistry, University of California, Berkeley, CA 94720.
Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Proc Natl Acad Sci U S A. 2021 Nov 23;118(47). doi: 10.1073/pnas.2103626118.
Here, we present detailed kinetic analyses of a panel of soluble lipid kinases and phosphatases, as well as Ras activating proteins, acting on their respective membrane surface substrates. The results reveal that the mean catalytic rate of such interfacial enzymes can exhibit a strong dependence on the size of the reaction system-in this case membrane area. Experimental measurements and kinetic modeling reveal how stochastic effects stemming from low molecular copy numbers of the enzymes alter reaction kinetics based on mechanistic characteristics of the enzyme, such as positive feedback. For the competitive enzymatic cycles studied here, the final product-consisting of a specific lipid composition or Ras activity state-depends on the size of the reaction system. Furthermore, we demonstrate how these reaction size dependencies can be controlled by engineering feedback mechanisms into the enzymes.
在这里,我们对一系列作用于各自膜表面底物的可溶性脂质激酶和磷酸酶,以及 Ras 激活蛋白进行了详细的动力学分析。结果表明,这种界面酶的平均催化速率可以强烈依赖于反应体系的大小 - 在这种情况下是膜面积。实验测量和动力学建模揭示了酶的分子数量较低引起的随机效应如何根据酶的机制特征(例如正反馈)改变反应动力学。对于这里研究的竞争性酶循环,最终产物 - 由特定的脂质组成或 Ras 活性状态组成 - 取决于反应体系的大小。此外,我们还展示了如何通过将反馈机制引入酶中来控制这些反应大小的依赖性。