Chakravarty Dhiman, Bihani Subhash C, Banerjee Manisha, Kalwani Prakash, Ballal Anand
Molecular Biology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, 400085, India; Homi Bhabha National Institute, Anushaktinagar, Mumbai, 400094, India.
Radiation Biology & Health Sciences Division, Trombay, Mumbai, 400085, India; Homi Bhabha National Institute, Anushaktinagar, Mumbai, 400094, India.
Free Radic Biol Med. 2022 Feb 1;179:266-276. doi: 10.1016/j.freeradbiomed.2021.11.016. Epub 2021 Nov 16.
KatB, a hexameric Mn-catalase, plays a vital role in overcoming oxidative and salinity stress in the ecologically important, N-fixing cyanobacterium, Anabaena. The 5 N-terminal residues of KatB, which show a high degree of conservation in cyanobacteria, form an antiparallel β-strand at the subunit interface of the KatB hexamer. In this study, the contribution of these N-terminal non-active site residues, towards the maintenance of the structure, biochemical properties, and redox balance was evaluated. Each N-terminal amino acid residue from the 2nd to the 7th position of KatB was individually mutated to Ala (to express KatBF2A/KatBF3A/KatBH4A/KatBK5E/KatBK6A/KatBE7A) or this entire 6 amino acid stretch was deleted (to yield KatBTrunc). All the above-mentioned KatB variants, along with the wild-type KatB protein (KatBWT), were overproduced in E. coli and purified. In comparison to KatBWT, the KatBF2A/KatBH4A/KatBTrunc proteins were less compact, more prone to chemical/thermal denaturation, and were unexpectedly inactive. KatBF3A/KatBK5E/KatBK6A showed biophysical/biochemical properties that were in between that of KatBWT and KatBF2A/KatBH4A/KatBTrunc. Surprisingly, KatBE7A was more thermostable with higher activity than KatBWT. On exposure to HO, E. coli expressing KatBWT/KatBE7A showed considerably reduced formation of ROS and increased survival than the other KatB variants. Utilizing the KatB structure, the molecular basis responsible for the altered stability/activity of the KatB mutants was delineated. This study demonstrates the physiological importance of the N-terminal β-strand of Mn-catalases in combating HO stress and shows that the non-active site residues can be used for rational protein engineering to develop Mn-catalases with improved characteristics.
KatB是一种六聚体锰过氧化氢酶,在具有重要生态意义的固氮蓝藻鱼腥藻中,对于克服氧化和盐胁迫起着至关重要的作用。KatB的5个N端残基在蓝藻中具有高度保守性,在KatB六聚体的亚基界面形成一条反平行β链。在本研究中,评估了这些N端非活性位点残基对维持结构、生化特性和氧化还原平衡的贡献。将KatB第2至7位的每个N端氨基酸残基分别突变为丙氨酸(以表达KatBF2A/KatBF3A/KatBH4A/KatBK5E/KatBK6A/KatBE7A),或者删除这整个6个氨基酸片段(以产生KatBTrunc)。上述所有KatB变体以及野生型KatB蛋白(KatBWT)在大肠杆菌中过量表达并纯化。与KatBWT相比,KatBF2A/KatBH4A/KatBTrunc蛋白结构较松散,更易发生化学/热变性,且出人意料地无活性。KatBF3A/KatBK5E/KatBK6A表现出介于KatBWT和KatBF2A/KatBH4A/KatBTrunc之间的生物物理/生化特性。令人惊讶的是,KatBE7A比KatBWT更耐热且活性更高。在暴露于H₂O₂时,表达KatBWT/KatBE7A的大肠杆菌与其他KatB变体相比,ROS形成显著减少,存活率增加。利用KatB结构,阐明了导致KatB突变体稳定性/活性改变的分子基础。本研究证明了锰过氧化氢酶N端β链在对抗H₂O₂胁迫中的生理重要性,并表明非活性位点残基可用于合理的蛋白质工程,以开发具有改进特性的锰过氧化氢酶。