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一项泛癌症分析揭示了 TIGIT 在肿瘤微环境中的作用。

A pan-cancer analysis revealing the role of TIGIT in tumor microenvironment.

机构信息

Department of Neurosurgery, Xiangya Hospital, Central South University, Changsha, 41008, China.

Department of Clinical Pharmacology, Xiangya Hospital, Central South University, Changsha, China.

出版信息

Sci Rep. 2021 Nov 18;11(1):22502. doi: 10.1038/s41598-021-01933-9.

Abstract

T cell immunoreceptor with immunoglobulin and ITIM domain (TIGIT), an immune checkpoint, plays a pivotal role in immune suppression. However its role in tumor immunity and correlation with the genetic and epigenetic alterations remains unknown. Here, we comprehensively analyzed the expression patterns of the TIGIT and its value of prognostic prediction among 33 types of cancers based on the data collected from The Cancer Genome Atlas (TCGA) and the Genotype-Tissue Expression projects (GTEx). Furthermore, the correlations of TIGIT with pathological stages, tumor-infiltrating immune cells (TIICs), signatures of T cells subtypes, immune checkpoint genes, the degree of Estimation of STromal and Immune cells in MAlignant Tumor tissues using the Expression data (ESTIMATE), tumor mutation burden (TMB), microsatellite instability (MSI), mismatch repair (MMR) genes, and DNA methyltransferases (DNMTs) were also explored. Gene functional enrichment was conducted by Gene Set Enrichment Analysis (GSEA). Our results showed that the expression of TIGIT was upregulated in most of the cancer types. Cox regression model showed that high expression of TIGIT in tumor samples correlates with poor prognosis in KIRC, KIRP, LGG, UVM, and with favorable prognosis in BRCA, CECS, HNSC, SKCM. TIGIT expression positively correlated with advanced stages, TIICs, the signatures of effector T cells, exhausted T cells, effector Tregs and the degree of ESTIMATE in KIRC, KIRP and UVM. TIGIT expression also positively correlated with CTLA4, PDCD1 (PD-1), CD274 (PD-L1), ICOS in most of the cancer types. Furthermore, the expression of TIGIT was correlated with TMB, MSI, MMR genes and DNMTs in different types of cancers. GSEA analysis showed that the expression of TIGIT was related to cytokine-cytokine receptor interaction, allograft rejection, oxidative phosphorylation. These findings suggested that TIGIT could serve as a potential biomarker for prognosis and a novel target for immunotherapies in cancers.

摘要

T 细胞免疫受体免疫球蛋白和 ITIM 结构域(TIGIT)是一种免疫检查点,在免疫抑制中发挥关键作用。然而,其在肿瘤免疫中的作用及其与遗传和表观遗传改变的关系尚不清楚。在这里,我们基于从癌症基因组图谱(TCGA)和基因型组织表达项目(GTEx)收集的数据,全面分析了 TIGIT 的表达模式及其在 33 种癌症中的预后预测价值。此外,还探讨了 TIGIT 与病理分期、肿瘤浸润免疫细胞(TIIC)、T 细胞亚群特征、免疫检查点基因、恶性肿瘤组织中基质和免疫细胞的估计使用表达数据(ESTIMATE)、肿瘤突变负担(TMB)、微卫星不稳定性(MSI)、错配修复(MMR)基因和 DNA 甲基转移酶(DNMTs)的相关性。通过基因集富集分析(GSEA)进行基因功能富集。结果表明,TIGIT 的表达在大多数癌症类型中上调。Cox 回归模型显示,肿瘤样本中 TIGIT 的高表达与 KIRC、KIRP、LGG、UVM 中的不良预后相关,与 BRCA、CECCS、HNSC、SKCM 中的良好预后相关。TIGIT 表达与 KIRC、KIRP 和 UVM 中的晚期阶段、TIICs、效应 T 细胞、耗竭 T 细胞、效应 Tregs 和 ESTIMATE 程度呈正相关。TIGIT 表达还与大多数癌症类型中的 CTLA4、PDCD1(PD-1)、CD274(PD-L1)和 ICOS 呈正相关。此外,TIGIT 的表达与不同类型癌症中的 TMB、MSI、MMR 基因和 DNMTs 相关。GSEA 分析表明,TIGIT 的表达与细胞因子-细胞因子受体相互作用、同种异体移植排斥、氧化磷酸化有关。这些发现表明,TIGIT 可以作为癌症预后的潜在生物标志物和免疫治疗的新靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/14da/8602416/ccf58b184eb5/41598_2021_1933_Fig1_HTML.jpg

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