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使用以有效利用绘图空间来处理大型数据集和异常值。

Use to Effectively Utilize Plotting Space to Deal With Large Datasets and Outliers.

作者信息

Xu Shuangbin, Chen Meijun, Feng Tingze, Zhan Li, Zhou Lang, Yu Guangchuang

机构信息

Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, China.

出版信息

Front Genet. 2021 Nov 2;12:774846. doi: 10.3389/fgene.2021.774846. eCollection 2021.

Abstract

With the rapid increase of large-scale datasets, biomedical data visualization is facing challenges. The data may be large, have different orders of magnitude, contain extreme values, and the data distribution is not clear. Here we present an R package that allows users to create broken axes using syntax. It can effectively use the plotting area to deal with large datasets (especially for long sequential data), data with different magnitudes, and contain outliers. The package increases the available visual space for a better presentation of the data and detailed annotation, thus improves our ability to interpret the data. The package is fully compatible with and it is easy to superpose additional layers and applies scale and theme to adjust the plot using the syntax. The package is open-source software released under the Artistic-2.0 license, and it is freely available on CRAN (https://CRAN.R-project.org/package=ggbreak) and Github (https://github.com/YuLab-SMU/ggbreak).

摘要

随着大规模数据集的迅速增加,生物医学数据可视化面临着挑战。数据可能很大,具有不同的数量级,包含极端值,并且数据分布不明确。在这里,我们展示了一个R包,它允许用户使用特定语法创建断裂轴。它可以有效地利用绘图区域来处理大型数据集(特别是对于长序列数据)、具有不同数量级的数据以及包含异常值的数据。该包增加了可用的视觉空间,以便更好地呈现数据和进行详细注释,从而提高我们解释数据的能力。该包与特定软件完全兼容,并且很容易叠加其他图层,并使用特定语法应用比例和主题来调整绘图。该包是根据Artistic-2.0许可发布的开源软件,可在CRAN(https://CRAN.R-project.org/package=ggbreak)和Github(https://github.com/YuLab-SMU/ggbreak)上免费获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3afd/8593043/23a0cfea52b8/fgene-12-774846-g001.jpg

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