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螺旋体科(Spirurina: Quimperiidae)全线粒体基因组测序:基因排列与系统发育意义。

Sequencing of the Complete Mitochondrial Genome of (Spirurina: Quimperiidae): Gene Arrangements and Phylogenetic Implications.

机构信息

College of Science, Tibet University, Lhasa 850000, China.

Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China.

出版信息

Genes (Basel). 2021 Nov 8;12(11):1772. doi: 10.3390/genes12111772.

DOI:10.3390/genes12111772
PMID:34828378
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8624427/
Abstract

Despite several decades of intensive research on spirurine nematodes, molecular data on some of the main lineages are still absent, which makes taxonomic classification insufficiently resolved. In the present study, we sequenced the first complete mitogenome for the family Quimperiidae, belonging to (Spirurina: Quimperiidae), a parasite living in the intestines of snakehead (). The circular mitogenome is 13,874 bp long, and it contains the standard nematode gene set: 22 transfer RNAs, 2 ribosomal RNAs and 12 protein-coding genes. There are also two long non-coding regions (NCR), in addition to only 8 other intergenic regions, ranging in size from 1 to 58 bp. To investigate its phylogenetic position and study the relationships among other available Spirurina, we performed the phylogenetic analysis using Bayesian inference and maximum likelihood approaches by concatenating the nucleotide sequences of all 36 genes on a dataset containing all available mitogenomes of the suborder Spirurina from NCBI and compared with gene order phylogenies using the MLGO program. Both supported the closer relationship of Ascaridoidea to Seuratoidea than to Spiruroidea. Pingus formed a sister-group with the Cucullanus genus. The results provide a new insights into the relationships within Spirurina.

摘要

尽管对旋尾线虫进行了几十年的深入研究,但一些主要谱系的分子数据仍然缺失,这使得分类学分类不够明确。在本研究中,我们对属于旋尾线虫科(Spirurina: Quimperiidae)的寄生虫进行了首次完整的线粒体基因组测序,该寄生虫生活在蛇头鱼(Channa striata)的肠道中。圆形的线粒体基因组长 13874bp,包含标准的线虫基因集:22 个转移 RNA、2 个核糖体 RNA 和 12 个蛋白质编码基因。还有两个长非编码区(NCR),此外只有 8 个其他基因间区,大小从 1 到 58bp 不等。为了研究其系统发育位置并研究其他可用的旋尾线虫之间的关系,我们使用贝叶斯推断和最大似然方法对包含所有可用的来自 NCBI 的旋尾亚目线粒体基因组的数据集进行了 36 个基因的核苷酸序列的系统发育分析,并使用 MLGO 程序比较了基因排序系统发育。两者都支持 Ascaridoidea 与 Seuratoidea 的关系比与 Spiruroidea 的关系更密切。Pingus 与 Cucullanus 属形成姐妹群。研究结果为旋尾线虫内的关系提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ae/8624427/f57aeb60d334/genes-12-01772-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ae/8624427/49408a8a221f/genes-12-01772-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ae/8624427/cceaef58cff3/genes-12-01772-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ae/8624427/f57aeb60d334/genes-12-01772-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ae/8624427/49408a8a221f/genes-12-01772-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ae/8624427/cceaef58cff3/genes-12-01772-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ae/8624427/f57aeb60d334/genes-12-01772-g003.jpg

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本文引用的文献

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Architectural instability, inverted skews and mitochondrial phylogenomics of Isopoda: outgroup choice affects the long-branch attraction artefacts.等足目动物的结构不稳定性、反向偏斜和线粒体系统发育基因组学:外类群选择会影响长枝吸引假象。
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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era.
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PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies.PhyloSuite:一个集成的、可扩展的桌面平台,用于简化分子序列数据管理和进化系统发育研究。
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