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同源异型盒基因家族的全基因组分析及[具体物种]中干旱响应成员的鉴定

Genome-Wide Analysis of the Homeobox Gene Family and Identification of Drought-Responsive Members in .

作者信息

Hou Jing, Sun Yan, Wang Lei, Jiang Yuanzhong, Chen Ningning, Tong Shaofei

机构信息

Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610065, China.

State Key Laboratory of Grassland Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou 730000, China.

出版信息

Plants (Basel). 2021 Oct 25;10(11):2284. doi: 10.3390/plants10112284.

Abstract

(HB) genes play critical roles in the regulation of plant morphogenesis, growth and development. Here, we identified a total of 156 genes from the genome. According to the topologies and taxonomy of the phylogenetic tree constructed by HB members, all PtrHB proteins were divided into six subgroups, namely HD-ZIP, ZF-HD, HB-PHD, TALE, WOX and HB-OTHERS. Multiple alignments of conserved homeodomains (HDs) revealed the conserved loci of each subgroup, while gene structure analysis showed similar exon-intron gene structures, and motif analysis indicated the similarity of motif number and pattern in the same subgroup. Promoter analysis indicated that the promoters of genes contain a series of -acting regulatory elements involved in responding to various abiotic stresses, indicating that s had potential functions in these processes. Collinearity analysis revealed that there are 96 pairs of 127 genes mainly distributing on Chromosomes 1, 2, and 5. We analyzed the spatio-temporal expression patterns of genes, and the virus-induced gene silencing (VIGS) of gene resulted in the compromised tolerance of poplar seedlings to mannitol treatment. The bioinformatics on family and preliminary exploration of drought-responsive genes can provide support for further study of the family in woody plants, especially in drought-related biological processes. It also provides a direction for developing new varieties of poplar with drought resistance. Overall, our results provided significant information for further functional analysis of genes in poplar and demonstrated that is a dominant gene regulating tolerance to water stress treatment in poplar seedlings.

摘要

(HB)基因在植物形态发生、生长和发育的调控中发挥着关键作用。在此,我们从基因组中总共鉴定出156个基因。根据由HB成员构建的系统发育树的拓扑结构和分类,所有PtrHB蛋白被分为六个亚组,即HD-ZIP、ZF-HD、HB-PHD、TALE、WOX和HB-OTHERS。保守同源结构域(HDs)的多序列比对揭示了每个亚组的保守位点,而基因结构分析显示了相似的外显子-内含子基因结构,基序分析表明同一亚组中基序数量和模式的相似性。启动子分析表明,这些基因的启动子包含一系列参与响应各种非生物胁迫的顺式作用调控元件,表明这些基因在这些过程中具有潜在功能。共线性分析表明,127个基因中的96对主要分布在第1、2和5号染色体上。我们分析了这些基因的时空表达模式,并且对其中一个基因进行病毒诱导基因沉默(VIGS)导致杨树幼苗对甘露醇处理的耐受性受损。关于该基因家族的生物信息学和对干旱响应基因的初步探索可为进一步研究木本植物中的该基因家族,尤其是干旱相关生物学过程提供支持。它也为培育抗旱杨树新品种提供了方向。总体而言,我们的结果为杨树中这些基因的进一步功能分析提供了重要信息,并证明该基因是调控杨树幼苗对水分胁迫处理耐受性的主导基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a9f/8653966/6654943a0c31/plants-10-02284-g001.jpg

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