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从脱水和复水的转录组中鉴定复苏基因。

Identification of resurrection genes from the transcriptome of dehydrated and rehydrated .

机构信息

Department of Molecular Bioscience, Kangwon National University, Chuncheon, Korea.

Department of Agriculture and Life Industry, Kangwon National University, Chuncheon, Korea.

出版信息

Plant Signal Behav. 2021 Dec 2;16(12):1973703. doi: 10.1080/15592324.2021.1973703. Epub 2021 Nov 28.

Abstract

is a lycophyta species that survives under extremely dry conditions via the mechanism of resurrection. This phenomenon involves the regulation of numerous genes that play vital roles in desiccation tolerance and subsequent rehydration. To identify resurrection-related genes, we analyzed the transcriptome between dehydration conditions and rehydration conditions of . The assembly generated 124,417 transcripts with an average size of 1,000 bp and 87,754 unigenes. Among these genes, 1,267 genes and 634 genes were up and down regulated by rehydration compared to dehydration. To understand gene function, we annotated Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG). The unigenes encoding early light-inducible protein () were down-regulated, whereas pentatricopeptide repeat-containing protein (), late embryogenesis abundant proteins (), sucrose nonfermenting protein (), trehalose phosphate phosphatase (), trehalose phosphate synthase (), and ABC transporter G family () were significantly up-regulated in response to rehydration conditions by differentially expressed genes (DEGs) analysis. Several studies provide evidence that these genes play a role in stress environment. The and genes are involved in chloroplast protection during dehydration and rehydration. , and trehalose genes are known to be oxidant scavengers that protect the cell structure from the deleterious effect of drought. and genes were found in the starch and sucrose metabolism pathways, which are essential sugar-signaling metabolites regulating plant metabolism and other biological processes. gene interacts with abscisic acid (ABA) phytohormone in the stomata opening during stress conditions. Our findings provide valuable information and candidate resurrection genes for future functional analysis aimed at improving the drought tolerance of crop plants.

摘要

是一种石松纲植物,能够通过复苏机制在极其干燥的条件下生存。这种现象涉及到许多基因的调控,这些基因在耐旱性和随后的再水合中起着至关重要的作用。为了鉴定与复苏相关的基因,我们分析了 在脱水和再水合条件下的转录组。 组装生成了 124417 个转录本,平均大小为 1000bp,有 87754 个 unigenes。在这些基因中,有 1267 个基因和 634 个基因在再水合与脱水相比时被上调和下调。为了理解基因功能,我们注释了基因本体论(GO)和京都基因与基因组百科全书(KEGG)。编码早期光诱导蛋白()的 unigenes被下调,而五肽重复蛋白()、晚期胚胎丰富蛋白()、蔗糖非发酵蛋白()、海藻糖磷酸磷酸酶()、海藻糖磷酸合酶()和 ABC 转运蛋白 G 家族()在再水合条件下通过差异表达基因(DEGs)分析显著上调。一些研究提供了证据,证明这些基因在应激环境中发挥作用。 和 基因参与脱水和再水合过程中叶绿体的保护。 和海藻糖基因是已知的抗氧化剂清除剂,可保护细胞结构免受干旱的有害影响。 和 基因在淀粉和蔗糖代谢途径中发现,这些途径是调节植物代谢和其他生物过程的必需糖信号代谢物。 基因与脱落酸(ABA)植物激素相互作用,在胁迫条件下调节气孔开放。我们的研究结果为未来的功能分析提供了有价值的信息和候选复苏基因,旨在提高作物的耐旱性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f0d/9208788/bdd7d780afd0/KPSB_A_1973703_F0001_OC.jpg

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