Unno Takuma, Takatsuka Hisashi, Ohnishi Yuto, Ito Masahiro, Kubota Yukihiko
Advanced Life Sciences Program, Graduate School of Life Sciences, Ritsumeikan University, 1-1-1 Nojihigashi, Kusatsu, Shiga, 525-8577, Japan.
Department of Bioinformatics, College of Life Sciences, Ritsumeikan University, 1-1-1 Nojihigashi, Kusatsu, Shiga, 525-8577, Japan.
Genes Genomics. 2022 Mar;44(3):343-357. doi: 10.1007/s13258-021-01195-9. Epub 2021 Nov 29.
Caenorhabditis elegans encodes three class I histone deacetylases (HDACs), HDA-1, HDA-2, and HDA-3. Although HDA-1 is known to be involved in embryogenesis, the regulatory roles of HDA-2 and HDA-3 in embryonic development remain unexplored.
To elucidate the functional roles of the three class I HDACs in C. elegans embryonic development.
The roles of Class I HDACs, HDA-1, HDA-2, and HDA-3 in Caenorhabditis elegans during embryogenesis were investigated through the analysis of embryonic lethality via gene knockdown or deletion mutants. Additionally, the size of these knockdown and mutant eggs was observed using a differential interference contrast microscope. Finally, expression pattern and tissue-specific role of hda-2 and transcriptome of the hda-2 mutant were analyzed.
Here, we report that HDA-1 and HDA-2, but not HDA-3, play essential roles in Caenorhabditis elegans embryonic development. Our observations of the fertilized egg size variance demonstrated that HDA-2 is involved in regulating the size of fertilized eggs. Combined analysis of expression patterns and sheath cell-specific rescue experiments indicated that the transgenerational role of HDA-2 is involved in the viability of embryonic development and fertilized egg size regulation. Furthermore, transcriptome analysis of hda-2 mutant embryos implies that HDA-2 is involved in epigenetic regulation of embryonic biological processes by downregulating and upregulating the gene expression.
Our finding suggests that HDA-2 regulates the embryonic development in Caenorhabditis elegans by controling a specific subset of genes, and this function might be mediated by transgenerational epigenetic effect.
秀丽隐杆线虫编码三种I类组蛋白去乙酰化酶(HDACs),即HDA-1、HDA-2和HDA-3。虽然已知HDA-1参与胚胎发生,但HDA-2和HDA-3在胚胎发育中的调控作用仍未得到探索。
阐明三种I类HDACs在秀丽隐杆线虫胚胎发育中的功能作用。
通过基因敲低或缺失突变体分析胚胎致死率,研究I类HDACs,即HDA-1、HDA-2和HDA-3在秀丽隐杆线虫胚胎发生过程中的作用。此外,使用微分干涉对比显微镜观察这些敲低和突变卵的大小。最后,分析hda-2的表达模式和组织特异性作用以及hda-2突变体的转录组。
在此,我们报告HDA-1和HDA-2而非HDA-3在秀丽隐杆线虫胚胎发育中起重要作用。我们对受精卵大小差异的观察表明,HDA-2参与调节受精卵的大小。表达模式和鞘细胞特异性拯救实验的联合分析表明,HDA-2的跨代作用参与胚胎发育的活力和受精卵大小的调节。此外,hda-2突变体胚胎的转录组分析表明,HDA-2通过下调和上调基因表达参与胚胎生物学过程的表观遗传调控。
我们的发现表明,HDA-2通过控制特定的基因子集调节秀丽隐杆线虫的胚胎发育,并且这种功能可能由跨代表观遗传效应介导。