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一个具有实际应用的本科实验室实验:利用无模板聚合酶链反应和实时聚合酶链反应检测 SARS-CoV-2 RNA。

An undergraduate laboratory experiment with real-world applications: Utilizing templateless polymerase chain reaction and real-time polymerase chain reaction to test for SARS-CoV-2 RNA.

机构信息

College of Health and Natural Sciences, Franklin Pierce University, Rindge, New Hampshire, USA.

出版信息

Biochem Mol Biol Educ. 2022 Jan;50(1):142-148. doi: 10.1002/bmb.21593. Epub 2021 Dec 4.

DOI:10.1002/bmb.21593
PMID:34862844
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9011848/
Abstract

We present a course-embedded undergraduate research module that involves real-time polymerase chain reaction testing for the presence of SARS-CoV-2 in environmental samples. A positive control RNA was constructed and two RNA extraction methods were compared and a range of primers were available to compare. Using a combination of published protocols, we assembled a successful project that illustrated a topical exercise similar to real-world assay development. The exercise is aimed at upper-level undergraduates and requires 3 weeks of laboratory periods. The students were able to design and test experimental protocols, while learning about RNA detection. This project could be utilized in upper-level classes including molecular biology, biochemistry, biotechnology, or for independent research projects.

摘要

我们提出了一个课程嵌入式本科研究模块,该模块涉及实时聚合酶链反应测试,以检测环境样本中 SARS-CoV-2 的存在。构建了阳性对照 RNA,并比较了两种 RNA 提取方法,并提供了一系列引物进行比较。使用组合的已发表方案,我们成功地完成了一个项目,该项目说明了与真实世界分析开发类似的专题练习。该练习针对高年级本科生,需要 3 周的实验室时间。学生可以设计和测试实验方案,同时了解 RNA 检测。该项目可用于分子生物学、生物化学、生物技术等高级课程,或用于独立的研究项目。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f113/9011848/ac8a64ac804b/BMB-50-142-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f113/9011848/ac8a64ac804b/BMB-50-142-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f113/9011848/ac8a64ac804b/BMB-50-142-g002.jpg

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本文引用的文献

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PLoS One. 2021 Dec 15;16(12):e0260487. doi: 10.1371/journal.pone.0260487. eCollection 2021.
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Direct RT-qPCR detection of SARS-CoV-2 RNA from patient nasopharyngeal swabs without an RNA extraction step.直接从患者鼻咽拭子中进行实时 RT-qPCR 检测 SARS-CoV-2 RNA,无需 RNA 提取步骤。
PLoS Biol. 2020 Oct 2;18(10):e3000896. doi: 10.1371/journal.pbio.3000896. eCollection 2020 Oct.
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Epidemiological Correlates of Polymerase Chain Reaction Cycle Threshold Values in the Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2).
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One-step nested RT-PCR for COVID-19 detection: A flexible, locally developed test for SARS-CoV2 nucleic acid detection.用于新冠病毒检测的一步法巢式逆转录聚合酶链反应:一种灵活的、本地开发的严重急性呼吸综合征冠状病毒2核酸检测方法。
J Infect Dev Ctries. 2020 Jul 31;14(7):679-684. doi: 10.3855/jidc.12726.
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