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白色念珠菌功能基因组筛选数据库。

A data library of Candida albicans functional genomic screens.

机构信息

Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON N1G 2W1, Canada.

出版信息

FEMS Yeast Res. 2021 Dec 2;21(7). doi: 10.1093/femsyr/foab060.

Abstract

Functional genomic screening of genetic mutant libraries enables the characterization of gene function in diverse organisms. For the fungal pathogen Candida albicans, several genetic mutant libraries have been generated and screened for diverse phenotypes, including tolerance to environmental stressors and antifungal drugs, and pathogenic traits such as cellular morphogenesis, biofilm formation and host-pathogen interactions. Here, we compile and organize C. albicans functional genomic screening data from ∼400 screens, to generate a data library of genetic mutant strains analyzed under diverse conditions. For quantitative screening data, we normalized these results to enable quantitative and comparative analysis of different genes across different phenotypes. Together, this provides a unique C. albicans genetic database, summarizing abundant phenotypic data from functional genomic screens in this critical fungal pathogen.

摘要

功能基因组筛选遗传突变文库使我们能够在不同的生物体中对基因功能进行描述。对于真菌病原体白色念珠菌,已经生成并筛选了几种遗传突变文库,以研究各种表型,包括对环境胁迫和抗真菌药物的耐受性,以及细胞形态发生、生物膜形成和宿主-病原体相互作用等致病特征。在这里,我们汇集并组织了约 400 次筛选的白色念珠菌功能基因组筛选数据,以生成一个在不同条件下分析的遗传突变株数据库。对于定量筛选数据,我们对这些结果进行了标准化,以实现不同表型中不同基因的定量和比较分析。总之,这提供了一个独特的白色念珠菌遗传数据库,总结了这个关键真菌病原体中功能基因组筛选的丰富表型数据。

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