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The characteristics of the complete chloroplast genome for (Myrtaceae).

作者信息

Gao Yisen, Zhang Jiayi, Tang Haining, Liu Nuoyi, Li Guiying, Yue Daran

机构信息

College of Computer Science and Technology, Changchun University of Science and Technology, Changchun, China.

College of Forestry, Hainan University, Haikou, China.

出版信息

Mitochondrial DNA B Resour. 2021 Nov 29;6(12):3517-3518. doi: 10.1080/23802359.2021.2005491. eCollection 2021.

DOI:10.1080/23802359.2021.2005491
PMID:34869898
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8635607/
Abstract

is a great tree of Myrtaceae. It is mainly distributed in Southeast provinces of China and Southeast Asian countries. There is no study on the genome of far. Here we report the complete chloroplast genome of , assembled from whole-genome high-throughput sequencing data, as a resource for future studies on the taxonomy and evolution of . The complete chloroplast genome of is 160,201 bp in length with a typical quadripartite structure, consisting of a large single-copy region (LSC, 88,905 bp), a single-copy region (SSC, 18,498 bp) and a pair of inverted repeats (IRs, 26,399 bp). It was predicted to contain a total of 128 genes, with an overall GC content of 36.86%. Phylogenetic analysis placed closest to

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e29/8635607/a0573dfc6de2/TMDN_A_2005491_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e29/8635607/a0573dfc6de2/TMDN_A_2005491_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e29/8635607/a0573dfc6de2/TMDN_A_2005491_F0001_B.jpg

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本文引用的文献

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GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.GetOrganelle:一个快速且通用的工具包,可用于准确从头组装细胞器基因组。
Genome Biol. 2020 Sep 10;21(1):241. doi: 10.1186/s13059-020-02154-5.
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Genome scans for divergent selection in natural populations of the widespread hardwood species Eucalyptus grandis (Myrtaceae) using microsatellites.
利用微卫星对广泛分布的硬木物种桉树(桃金娘科)的自然种群进行分歧选择的基因组扫描。
Sci Rep. 2016 Oct 17;6:34941. doi: 10.1038/srep34941.
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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.RAxML-VI-HPC:基于最大似然法的系统发育分析,适用于数千个分类单元及混合模型。
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