Machado Lilian de Oliveira, Vieira Leila do Nascimento, Stefenon Valdir Marcos, Oliveira Pedrosa Fábio de, Souza Emanuel Maltempi de, Guerra Miguel Pedro, Nodari Rubens Onofre
Laboratório de Fisiologia do Desenvolvimento e Genética Vegetal, Programa de Pós-graduação em Recursos Genéticos Vegetais, Universidade Federal de Santa Catarina, Rodovia Admar Gonzaga, 1346, 88040-900, Florianópolis, Santa Catarina, Brazil.
Núcleo de Genômica e Ecologia Molecular, Programa de Pós-graduação em Ciências Biológicas, Universidade Federal do Pampa, Av. Antônio Trilha 1847, 97300-000, São Clemente, São Gabriel, Rio Grande Do Sul, Brazil.
Genetica. 2017 Apr;145(2):163-174. doi: 10.1007/s10709-017-9954-1. Epub 2017 Feb 9.
Given their distribution, importance, and richness, Myrtaceae species comprise a model system for studying the evolution of tropical plant diversity. In addition, chloroplast (cp) genome sequencing is an efficient tool for phylogenetic relationship studies. Feijoa [Acca sellowiana (O. Berg) Burret; CN: pineapple-guava] is a Myrtaceae species that occurs naturally in southern Brazil and northern Uruguay. Feijoa is known for its exquisite perfume and flavorful fruits, pharmacological properties, ornamental value and increasing economic relevance. In the present work, we reported the complete cp genome of feijoa. The feijoa cp genome is a circular molecule of 159,370 bp with a quadripartite structure containing two single copy regions, a Large Single Copy region (LSC 88,028 bp) and a Small Single Copy region (SSC 18,598 bp) separated by Inverted Repeat regions (IRs 26,372 bp). The genome structure, gene order, GC content and codon usage are similar to those of typical angiosperm cp genomes. When compared to other cp genome sequences of Myrtaceae, feijoa showed closest relationship with pitanga (Eugenia uniflora L.). Furthermore, a comparison of pitanga synonymous (Ks) and nonsynonymous (Ka) substitution rates revealed extremely low values. Maximum Likelihood and Bayesian Inference analyses produced phylogenomic trees identical in topology. These trees supported monophyly of three Myrtoideae clades.
鉴于桃金娘科植物的分布、重要性和丰富性,它们构成了一个研究热带植物多样性进化的模型系统。此外,叶绿体(cp)基因组测序是研究系统发育关系的有效工具。费约果[南美稔(O. Berg)Burret;中文名称:番石榴]是一种桃金娘科植物,自然生长于巴西南部和乌拉圭北部。费约果以其迷人的香气、美味的果实、药理特性、观赏价值以及日益增长的经济价值而闻名。在本研究中,我们报道了费约果的完整cp基因组。费约果cp基因组是一个159,370 bp的环状分子,具有四分体结构,包含两个单拷贝区域,一个大单拷贝区域(LSC 88,028 bp)和一个小单拷贝区域(SSC 18,598 bp),由反向重复区域(IRs 26,372 bp)隔开。其基因组结构、基因顺序、GC含量和密码子使用情况与典型被子植物cp基因组相似。与桃金娘科其他cp基因组序列相比,费约果与番樱桃(Eugenia uniflora L.)的关系最为密切。此外,对番樱桃同义(Ks)和非同义(Ka)替换率的比较显示其值极低。最大似然法和贝叶斯推断分析产生的系统发育树拓扑结构相同。这些树支持三个桃金娘亚科分支的单系性。