减毒鸡滑液支原体菌株5-9的全基因组测序
Complete Genome Sequencing of the Attenuated Strain Mycoplasma synoviae 5-9.
作者信息
Zhang Xiaorong, Chen Yang, Wei Zehua, Ma Shuang, Guo Mengjiao, Chu Dianfeng, Zhang Chengcheng, Cao Yongzhong, Wu Yantao
机构信息
Jiangsu Co-Innovation Center for the Prevention and Control of Animal Infectious Disease and Zoonoses, College of Veterinary Medicine, Yangzhou University, Yangzhou, Jiangsu, China.
State Key Laboratory of Genetically Engineered Veterinary Vaccines, Qingdao Yebio Biological Engineering Co., Ltd., Qingdao, Shandong, China.
出版信息
Microbiol Resour Announc. 2021 Dec 9;10(49):e0098121. doi: 10.1128/MRA.00981-21.
Abstract
Here, we present the complete genome sequence of Mycoplasma synoviae strain 5-9. Strain 5-9 was attenuated by chemical mutagenesis from a field strain isolated from egg breeders in Ningxia, China. It was completely sequenced and its genome annotated; it is presented with the relevant data as a potential vaccine candidate.
摘要
在此，我们展示了鸡滑液囊支原体5-9株的完整基因组序列。5-9株是由从中国宁夏蛋种鸡场分离的一株野毒株经化学诱变致弱而来。对其进行了全基因组测序和注释；现将相关数据作为一种潜在的疫苗候选物呈现出来。
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本文引用的文献
1
Multi-locus sequence typing analysis of Mycoplasma synoviae isolates reveals unique sequence types in China.多基因序列分型分析表明中国分离的滑液支原体具有独特的序列类型。
Vet Microbiol. 2021 Aug;259:109101. doi: 10.1016/j.vetmic.2021.109101. Epub 2021 Jun 17.
2
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
3
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.ABySS 2.0：使用布隆过滤器对大型基因组进行资源高效组装。
Genome Res. 2017 May;27(5):768-777. doi: 10.1101/gr.214346.116. Epub 2017 Feb 23.
4
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.tRNAscan-SE在线工具：整合搜索与上下文以分析转运RNA基因
Nucleic Acids Res. 2016 Jul 8;44(W1):W54-7. doi: 10.1093/nar/gkw413. Epub 2016 May 12.
5
Erratum to: Laboratory investigations into the origin of Mycoplasma synoviae isolated from a lesser flamingo (Phoeniconaias minor).《从小火烈鸟（Phoeniconaias minor）分离出的滑液支原体起源的实验室调查》勘误
BMC Vet Res. 2016 Apr 12;12:75. doi: 10.1186/s12917-016-0699-3.
6
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7
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9
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Genome Res. 2009 Sep;19(9):1639-45. doi: 10.1101/gr.092759.109. Epub 2009 Jun 18.
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