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一种基于机器学习的用户友好型软件平台,用于自动进行放射组学建模和分析。

A new machine learning based user-friendly software platform for automatic radiomics modeling and analysis.

出版信息

Annu Int Conf IEEE Eng Med Biol Soc. 2021 Nov;2021:2810-2814. doi: 10.1109/EMBC46164.2021.9630472.

Abstract

Supervised machine learning methods are usually used to build a custom model for disease diagnosis and auxiliary prognosis in radiomics studies. A classical machine learning pipeline involves a series of steps and multiple algorithms, which leads to a great challenge to find an appropriate combination of algorithms and an optimal hyper-parameter set for radiomics model building. We developed a freely available software package for radiomics model building. It can be used to lesion labeling, feature extraction, feature selection, classifier training and statistic result visualization. This software provides a user-friendly graphic interface and flexible IOs for radiologists and researchers to automatically develop radiomics models. Moreover, this software can extract features from corresponding lesion regions in multi-modality images, which is labeled by semi-automatic or full-automatic segmentation algorithms. It is designed in a loosely coupled architecture, programmed with Qt, VTK, and Python. In order to evaluate the availability and effectiveness of the software, we utilized it to build a CT-based radiomics model containing peritumoral features for malignancy grading of cell renal cell carcinoma. The final model got a good performance of grading study with AUC=0.848 on independent validation dataset.Clinical Relevance-the developed provides convenient and powerful toolboxes to build radiomics models for radiologists and researchers on clinical studies.

摘要

监督机器学习方法通常用于构建放射组学研究中疾病诊断和辅助预后的定制模型。经典的机器学习流程涉及一系列步骤和多个算法,这使得找到合适的算法组合和放射组学模型构建的最优超参数集成为一项巨大的挑战。我们开发了一个免费的放射组学模型构建软件包。它可用于病灶标记、特征提取、特征选择、分类器训练和统计结果可视化。该软件提供了一个用户友好的图形界面和灵活的 I/O,方便放射科医生和研究人员自动开发放射组学模型。此外,该软件还可以从相应的多模态图像的病灶区域中提取特征,这些特征由半自动或全自动分割算法进行标记。它采用松散耦合的架构设计,使用 Qt、VTK 和 Python 进行编程。为了评估该软件的可用性和有效性,我们利用它构建了一个基于 CT 的放射组学模型,包含肿瘤周围特征,用于细胞肾细胞癌的恶性程度分级。最终的模型在独立验证数据集上的分级研究中表现出了良好的性能,AUC=0.848。临床相关性-该软件为放射科医生和研究人员在临床研究中构建放射组学模型提供了方便、强大的工具包。

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