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动态转录调控在单分子水平上。

Dynamic transcription regulation at the single-molecule level.

机构信息

Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, 100871, China; Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, 100871, China.

Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, 100871, China; Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, 100871, China; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, 100871, China; Peking-Tsinghua Center for Life Sciences (CLS), Peking University, Beijing, 100871, China; School of Life Sciences, Peking University, Beijing, 100871, China.

出版信息

Dev Biol. 2022 Feb;482:67-81. doi: 10.1016/j.ydbio.2021.11.004. Epub 2021 Dec 9.

DOI:10.1016/j.ydbio.2021.11.004
PMID:34896367
Abstract

Cell fate changes during development, differentiation, and reprogramming are largely controlled at the transcription level. The DNA-binding transcription factors (TFs) often act in a combinatorial fashion to alter chromatin states and drive cell type-specific gene expression. Recent advances in fluorescent microscopy technologies have enabled direct visualization of biomolecules involved in the process of transcription and its regulatory events at the single-molecule level in living cells. Remarkably, imaging and tracking individual TF molecules at high temporal and spatial resolution revealed that they are highly dynamic in searching and binding cognate targets, rather than static and binding constantly. In combination with investigation using techniques from biochemistry, structure biology, genetics, and genomics, a more well-rounded view of transcription regulation is emerging. In this review, we briefly cover the technical aspects of live-cell single-molecule imaging and focus on the biological relevance and interpretation of the single-molecule dynamic features of transcription regulatory events observed in the native chromatin environment of living eukaryotic cells. We also discuss how these dynamic features might shed light on mechanistic understanding of transcription regulation.

摘要

细胞命运在发育、分化和重编程过程中的改变在很大程度上受转录水平的控制。DNA 结合转录因子(TFs)通常以组合的方式发挥作用,改变染色质状态并驱动细胞类型特异性基因表达。荧光显微镜技术的最新进展使我们能够在活细胞中单分子水平上直接可视化参与转录过程及其调控事件的生物分子。值得注意的是,对单个 TF 分子进行高时空分辨率的成像和跟踪揭示了它们在搜索和结合同源靶标时具有高度的动态性,而不是静态的和持续的结合。结合生物化学、结构生物学、遗传学和基因组学的研究,转录调控的更全面的观点正在出现。在这篇综述中,我们简要介绍了活细胞单分子成像的技术方面,并重点介绍了在活真核细胞的天然染色质环境中观察到的转录调控事件的单分子动态特征的生物学相关性和解释。我们还讨论了这些动态特征如何有助于理解转录调控的机制。

相似文献

1
Dynamic transcription regulation at the single-molecule level.动态转录调控在单分子水平上。
Dev Biol. 2022 Feb;482:67-81. doi: 10.1016/j.ydbio.2021.11.004. Epub 2021 Dec 9.
2
Visualizing transcription factor dynamics in living cells.在活细胞中可视化转录因子动力学。
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Single-molecule tracking of transcription protein dynamics in living cells: seeing is believing, but what are we seeing?活细胞中转录蛋白动力学的单分子追踪:眼见为实,但我们看到的是什么?
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Single-Molecule Nanoscopy Elucidates RNA Polymerase II Transcription at Single Genes in Live Cells.单分子纳米成像技术阐明活细胞中单基因 RNA 聚合酶 II 的转录。
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Dynamic chromatin technologies: from individual molecules to epigenomic regulation in cells.动态染色质技术:从单个分子到细胞中的表观基因组调控。
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The transcriptional regulatory code of eukaryotic cells--insights from genome-wide analysis of chromatin organization and transcription factor binding.真核细胞的转录调控密码——来自染色质组织和转录因子结合全基因组分析的见解
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Imaging Transcriptional Regulation of Eukaryotic mRNA Genes: Advances and Outlook.真核生物mRNA基因的成像转录调控:进展与展望
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Imaging of DNA and RNA in Living Eukaryotic Cells to Reveal Spatiotemporal Dynamics of Gene Expression.在活真核细胞中对 DNA 和 RNA 的成像以揭示基因表达的时空动态。
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