Bannay Aurélie, Bories Mathilde, Le Corre Pascal, Riou Christine, Lemordant Pierre, Van Hille Pascal, Chazard Emmanuel, Dode Xavier, Cuggia Marc, Bouzillé Guillaume
Université de Lorraine, Centre Hospitalier Régional Universitaire de Nancy, Centre national de la recherche scientifique, Inria, Laboratoire lorrain de recherche en informatique et ses applications, Nancy, France.
Inserm, Laboratoire Traitement du Signal et de l'Image - UMR 1099, Centre Hospitalier Universitaire de Rennes, Université de Rennes 1, Rennes, France.
JMIR Med Inform. 2021 Dec 13;9(12):e29286. doi: 10.2196/29286.
Linking different sources of medical data is a promising approach to analyze care trajectories. The aim of the INSHARE (Integrating and Sharing Health Big Data for Research) project was to provide the blueprint for a technological platform that facilitates integration, sharing, and reuse of data from 2 sources: the clinical data warehouse (CDW) of the Rennes academic hospital, called eHOP (entrepôt Hôpital), and a data set extracted from the French national claim data warehouse (Système National des Données de Santé [SNDS]).
This study aims to demonstrate how the INSHARE platform can support big data analytic tasks in the health field using a pharmacovigilance use case based on statin consumption and statin-drug interactions.
A Spark distributed cluster-computing framework was used for the record linkage procedure and all analyses. A semideterministic record linkage method based on the common variables between the chosen data sources was developed to identify all patients discharged after at least one hospital stay at the Rennes academic hospital between 2015 and 2017. The use-case study focused on a cohort of patients treated with statins prescribed by their general practitioner or during their hospital stay.
The whole process (record linkage procedure and use-case analyses) required 88 minutes. Of the 161,532 and 164,316 patients from the SNDS and eHOP CDW data sets, respectively, 159,495 patients were successfully linked (98.74% and 97.07% of patients from SNDS and eHOP CDW, respectively). Of the 16,806 patients with at least one statin delivery, 8293 patients started the consumption before and continued during the hospital stay, 6382 patients stopped statin consumption at hospital admission, and 2131 patients initiated statins in hospital. Statin-drug interactions occurred more frequently during hospitalization than in the community (3800/10,424, 36.45% and 3253/14,675, 22.17%, respectively; P<.001). Only 121 patients had the most severe level of statin-drug interaction. Hospital stay burden (length of stay and in-hospital mortality) was more severe in patients with statin-drug interactions during hospitalization.
This study demonstrates the added value of combining and reusing clinical and claim data to provide large-scale measures of drug-drug interaction prevalence and care pathways outside hospitals. It builds a path to move the current health care system toward a Learning Health System using knowledge generated from research on real-world health data.
链接不同来源的医学数据是分析护理轨迹的一种很有前景的方法。INSHARE(整合与共享健康大数据用于研究)项目的目的是为一个技术平台提供蓝图,该平台有助于整合、共享和重用来自两个来源的数据:雷恩学术医院的临床数据仓库(CDW),称为eHOP(医院仓库),以及从法国国家索赔数据仓库(国家卫生数据系统[SNDS])中提取的数据集。
本研究旨在展示INSHARE平台如何使用基于他汀类药物消费和他汀类药物相互作用的药物警戒用例来支持健康领域的大数据分析任务。
使用Spark分布式集群计算框架进行记录链接程序和所有分析。开发了一种基于所选数据源之间公共变量的半确定性记录链接方法,以识别2015年至2017年期间在雷恩学术医院至少住院一次后出院的所有患者。该用例研究集中于一组由全科医生开出处方或在住院期间接受他汀类药物治疗的患者。
整个过程(记录链接程序和用例分析)需要88分钟。分别来自SNDS和eHOP CDW数据集的161,532名和164,316名患者中,有159,495名患者成功链接(分别占SNDS和eHOP CDW患者的98.74%和97.07%)。在16,806名至少接受过一次他汀类药物给药的患者中,8293名患者在住院前开始服用并在住院期间继续服用,6382名患者在入院时停止服用他汀类药物,2131名患者在医院开始服用他汀类药物。他汀类药物相互作用在住院期间比在社区更频繁发生(分别为3800/10,424,36.45%和3253/14,675,22.17%;P<0.001)。只有121名患者有最严重程度的他汀类药物相互作用。住院期间发生他汀类药物相互作用的患者的住院负担(住院时间和住院死亡率)更严重。
本研究证明了合并和重用临床数据与索赔数据以提供药物相互作用患病率和院外护理途径的大规模测量的附加价值。它构建了一条道路,可利用对真实世界健康数据的研究产生的知识,推动当前医疗保健系统向学习型健康系统发展。