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(禾本科)罗伯蒂(L.)的完整线粒体基因组及其系统发育分析。

The complete mitogenome of (L.) Roberty (Poaceae), with its phylogenetic analysis.

作者信息

Yang Shuqiong, Li Mengxin, Yu Jingjing, Cai Debao, Zhang Jun, Liu Jiafei, Chen Jibao

机构信息

Collaborative Innovation Center of Water Security for Water Source Region of Mid-line of South-to-North Diversion Project of Henan Province, Henan Provincial Key Laboratory of Ecological Security for Water Source Region of Mid-line of South-to-North Diversion Project, Henan Provincial Academician Workstation of Water Security, Nanyang Normal University, Nanyang, China.

Henan Key Laboratory of Insect Biology in Funiu Mountain, Nanyang Normal University, Nanyang, China.

出版信息

Mitochondrial DNA B Resour. 2021 Dec 10;7(1):25-27. doi: 10.1080/23802359.2021.2006814. eCollection 2022.

DOI:10.1080/23802359.2021.2006814
PMID:34912960
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8667889/
Abstract

Vetiver grass (), is a perennial and tussock C4 grass from the genus of Poaceae, which has been widely used as a natural and inexpensive resource for multifarious environmental applications. The complete mitogenome of was 551,622 bp in length, containing 40 protein-coding genes (PCGs), 19 transfer RNA genes (tRNAs), and six ribosomal RNA genes (rRNAs). All PCGs started with ATG and stopped with TNN (TAA, TAG, and TGA). The overall nucleotide composition is: 28.2% A, 28.2% T, 21.7% G, and 21.9% C, with a biased A + T content of 56.4%. Phylogenetic analysis using 14 PCGs of 22 species showed that display a close relationship with (LC107874) and (DQ984518) in Poaceae.

摘要

香根草()是禾本科香根草属的一种多年生丛生C4草本植物,已被广泛用作多种环境应用的天然且廉价的资源。香根草的完整线粒体基因组长度为551,622 bp,包含40个蛋白质编码基因(PCGs)、19个转运RNA基因(tRNAs)和6个核糖体RNA基因(rRNAs)。所有PCGs均以ATG起始,以TNN(TAA、TAG和TGA)终止。总体核苷酸组成是:A占28.2%,T占28.2%,G占21.7%,C占21.9%,A+T含量有偏差,为56.4%。使用22个物种的14个PCGs进行的系统发育分析表明,香根草在禾本科中与(LC107874)和(DQ984518)显示出密切关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc3b/8667889/b57efc13f150/TMDN_A_2006814_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc3b/8667889/b57efc13f150/TMDN_A_2006814_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc3b/8667889/b57efc13f150/TMDN_A_2006814_F0001_B.jpg

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本文引用的文献

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The sugarcane mitochondrial genome: assembly, phylogenetics and transcriptomics.甘蔗线粒体基因组:组装、系统发育学与转录组学
PeerJ. 2019 Sep 24;7:e7558. doi: 10.7717/peerj.7558. eCollection 2019.
2
tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.tRNAscan-SE:在基因组序列中搜索tRNA基因。
Methods Mol Biol. 2019;1962:1-14. doi: 10.1007/978-1-4939-9173-0_1.
3
De novo assembly and characterization of root transcriptome in two distinct morphotypes of vetiver, Chrysopogon zizaniodes (L.) Roberty.香根草(Chrysopogon zizaniodes (L.) Roberty)两种不同形态型根系转录组的从头组装与特征分析
Sci Rep. 2015 Dec 18;5:18630. doi: 10.1038/srep18630.
4
Plann: A command-line application for annotating plastome sequences.Plann:一个用于注释质体基因组序列的命令行应用程序。
Appl Plant Sci. 2015 Aug 10;3(8). doi: 10.3732/apps.1500026. eCollection 2015 Aug.
5
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
6
jModelTest 2: more models, new heuristics and parallel computing.jModelTest 2:更多模型、新启发式方法与并行计算。
Nat Methods. 2012 Jul 30;9(8):772. doi: 10.1038/nmeth.2109.
7
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.MrBayes 3.2:在大型模型空间中进行高效的贝叶斯系统发育推断和模型选择。
Syst Biol. 2012 May;61(3):539-42. doi: 10.1093/sysbio/sys029. Epub 2012 Feb 22.
8
Construction of validated, non-redundant composite protein sequence databases.构建经过验证的、无冗余的复合蛋白质序列数据库。
Protein Eng. 1990 Jan;3(3):153-9. doi: 10.1093/protein/3.3.153.